From b47280f599d41692332520f572b149bee03724c0 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 3 Dec 2024 23:37:22 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : 14243112e1d269a04fc546c107dd7d147a15b7ff
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-12-03 23:37:04 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : dc6a54f7e20c5d202a3b103f9ab6b36294bed9b5
Branch  : main
Author  : Naupaka Zimmerman <naupaka@gmail.com>
Time    : 2024-12-03 23:35:36 +0000
Message : Merge pull request #306 from datacarpentry/update/packages

Update 7 packages
---
 00-introduction.html                         |   4 +-
 01-r-basics.html                             |   4 +-
 02-data-prelude.html                         |   4 +-
 03-basics-factors-dataframes.html            |   8 ++--
 04-bioconductor-vcfr.html                    |   4 +-
 05-dplyr.html                                |  16 ++++----
 06-data-visualization.html                   |  12 +++---
 07-r-help.html                               |   4 +-
 CODE_OF_CONDUCT.html                         |   4 +-
 LICENSE.html                                 |   4 +-
 aio.html                                     |  40 +++++++++----------
 depth.pdf                                    | Bin 45059 -> 45059 bytes
 discuss.html                                 |   4 +-
 index.html                                   |   6 +--
 instructor/00-introduction.html              |   4 +-
 instructor/01-r-basics.html                  |   4 +-
 instructor/02-data-prelude.html              |   4 +-
 instructor/03-basics-factors-dataframes.html |   8 ++--
 instructor/04-bioconductor-vcfr.html         |   4 +-
 instructor/05-dplyr.html                     |  16 ++++----
 instructor/06-data-visualization.html        |  12 +++---
 instructor/07-r-help.html                    |   4 +-
 instructor/CODE_OF_CONDUCT.html              |   4 +-
 instructor/LICENSE.html                      |   4 +-
 instructor/aio.html                          |  40 +++++++++----------
 instructor/discuss.html                      |   4 +-
 instructor/index.html                        |   6 +--
 instructor/reference.html                    |   4 +-
 md5sum.txt                                   |  36 ++++++++---------
 pkgdown.yml                                  |   2 +-
 reference.html                               |   4 +-
 31 files changed, 137 insertions(+), 137 deletions(-)

diff --git a/00-introduction.html b/00-introduction.html
index 5ac765b4..7d1ab320 100644
--- a/00-introduction.html
+++ b/00-introduction.html
@@ -355,7 +355,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Introducing R and RStudio IDE</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/00-introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -1057,7 +1057,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/01-r-basics.html b/01-r-basics.html
index 4359e6db..d04693f4 100644
--- a/01-r-basics.html
+++ b/01-r-basics.html
@@ -356,7 +356,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>R Basics</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/01-r-basics.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -1830,7 +1830,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/01-r-basics.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/01-r-basics.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/02-data-prelude.html b/02-data-prelude.html
index f7201bc9..117fe216 100644
--- a/02-data-prelude.html
+++ b/02-data-prelude.html
@@ -348,7 +348,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Introduction to the example dataset and file type</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/02-data-prelude.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -653,7 +653,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/02-data-prelude.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/02-data-prelude.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/03-basics-factors-dataframes.html b/03-basics-factors-dataframes.html
index 71896465..5025a5cb 100644
--- a/03-basics-factors-dataframes.html
+++ b/03-basics-factors-dataframes.html
@@ -355,7 +355,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>R Basics continued - factors and data frames</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/03-basics-factors-dataframes.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -1120,7 +1120,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 
 # Installing packages --------------------------------------------------------
 - Installing ggplot2 ...                        OK [linked from cache]
-Successfully installed 1 package in 6.6 milliseconds.</code></pre>
+Successfully installed 1 package in 6.4 milliseconds.</code></pre>
 </div>
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1137,7 +1137,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 
 # Installing packages --------------------------------------------------------
 - Installing dplyr ...                          OK [linked from cache]
-Successfully installed 1 package in 5.7 milliseconds.</code></pre>
+Successfully installed 1 package in 5.6 milliseconds.</code></pre>
 </div>
 <p>These two packages are among the most popular add on packages used in
 R, and they are part of a large set of very useful packages called the
@@ -2166,7 +2166,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/03-basics-factors-dataframes.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/03-basics-factors-dataframes.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/04-bioconductor-vcfr.html b/04-bioconductor-vcfr.html
index 182f3dde..870cc3cf 100644
--- a/04-bioconductor-vcfr.html
+++ b/04-bioconductor-vcfr.html
@@ -350,7 +350,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Using packages from Bioconductor</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/04-bioconductor-vcfr.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -618,7 +618,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/04-bioconductor-vcfr.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/04-bioconductor-vcfr.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/05-dplyr.html b/05-dplyr.html
index 5cbb1db9..b2a1b4e8 100644
--- a/05-dplyr.html
+++ b/05-dplyr.html
@@ -344,7 +344,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Data Wrangling and Analyses with Tidyverse</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/05-dplyr.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -636,7 +636,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -688,7 +688,7 @@ <h3 class="callout-title">Challenge<em> (continued)</em>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Alternative solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb12">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -957,7 +957,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb28">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1156,7 +1156,7 @@ <h3 class="callout-title">Exercise: Pipe and filter</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb39">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1246,7 +1246,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb43">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1342,7 +1342,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution6" aria-expanded="false" aria-controls="collapseSolution6">
   <h4 class="accordion-header" id="headingSolution6"> Show me the solution </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1586,7 +1586,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/05-dplyr.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/05-dplyr.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/06-data-visualization.html b/06-data-visualization.html
index eda63d6e..ee67d470 100644
--- a/06-data-visualization.html
+++ b/06-data-visualization.html
@@ -353,7 +353,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Data Visualization with ggplot2</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/06-data-visualization.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -953,7 +953,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb25">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1048,7 +1048,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1095,7 +1095,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb32">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1140,7 +1140,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb34">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1287,7 +1287,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/06-data-visualization.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/06-data-visualization.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/07-r-help.html b/07-r-help.html
index c2589f66..00df5237 100644
--- a/07-r-help.html
+++ b/07-r-help.html
@@ -347,7 +347,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Getting help with R</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/07-r-help.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -599,7 +599,7 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/07-r-help.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/07-r-help.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index fe0583b8..6ab3d8df 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -333,7 +333,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Contributor Code of Conduct</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -412,7 +412,7 @@ <h1>Contributor Code of Conduct</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/CODE_OF_CONDUCT.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/CODE_OF_CONDUCT.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/LICENSE.html b/LICENSE.html
index 50d80746..cc4a547e 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -333,7 +333,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Licenses</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -460,7 +460,7 @@ <h1>Licenses</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/LICENSE.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/LICENSE.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-11-19",
+  "dateModified": "2024-12-03",
   "datePublished": "2024-12-03"
 }
 
diff --git a/aio.html b/aio.html
index dc9cc9f6..8ffb2cc2 100644
--- a/aio.html
+++ b/aio.html
@@ -394,7 +394,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         
 <section id="aio-00-introduction"><p>Content from <a href="00-introduction.html">Introducing R and RStudio IDE</a></p>
 <hr>
-<p>Last updated on 2024-11-19 |
+<p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/00-introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <div class="text-end">
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         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/04-bioconductor-vcfr.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
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   "dateCreated": "2018-03-12",
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diff --git a/instructor/05-dplyr.html b/instructor/05-dplyr.html
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       </div>
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         <h1>Data Wrangling and Analyses with Tidyverse</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/05-dplyr.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -638,7 +638,7 @@ <h3 class="callout-title">Challenge</h3>
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-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
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-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
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   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/05-dplyr.html",
   "dateCreated": "2018-03-12",
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diff --git a/instructor/06-data-visualization.html b/instructor/06-data-visualization.html
index 1216220a..22343b01 100644
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@@ -353,7 +353,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Data Visualization with ggplot2</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/06-data-visualization.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -955,7 +955,7 @@ <h3 class="callout-title">Challenge</h3>
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@@ -1142,7 +1142,7 @@ <h3 class="callout-title">Challenge</h3>
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@@ -1289,7 +1289,7 @@ <h3 class="callout-title">Key Points</h3>
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   "dateCreated": "2018-03-12",
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diff --git a/instructor/07-r-help.html b/instructor/07-r-help.html
index add31c60..1250fd5c 100644
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@@ -347,7 +347,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Getting help with R</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/07-r-help.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points</h3>
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diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
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@@ -333,7 +333,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Contributor Code of Conduct</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -414,7 +414,7 @@ <h1>Contributor Code of Conduct</h1>
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diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
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         <h1>Licenses</h1>
-        <p>Last updated on 2024-11-19 |
+        <p>Last updated on 2024-12-03 |
 
         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -462,7 +462,7 @@ <h1>Licenses</h1>
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   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/LICENSE.html",
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diff --git a/instructor/aio.html b/instructor/aio.html
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+<p>Last updated on 2024-12-03 |
 
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 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 45 minutes</p>
@@ -1087,7 +1087,7 @@ <h3 class="callout-title">Key Points</h3>
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 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 80 minutes</p>
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 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 15 minutes</p>
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 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 90 minutes</p>
@@ -3763,7 +3763,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 
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-<p>Last updated on 2024-11-19 |
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         <a href="https://github.com/datacarpentry/genomics-r-intro/edit/main/episodes/04-bioconductor-vcfr.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 13 minutes</p>
@@ -5016,7 +5016,7 @@ <h3 class="callout-title">Key Points</h3>
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 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 55 minutes</p>
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