diff --git a/00-introduction.html b/00-introduction.html index 7ec6a464..c2b440e7 100644 --- a/00-introduction.html +++ b/00-introduction.html @@ -355,7 +355,7 @@

Introducing R and RStudio IDE

-

Last updated on 2024-10-02 | +

Last updated on 2024-10-03 | Edit this page

@@ -415,7 +415,7 @@

Tip: This lesson works best on the cloud

virtual machine instances provided to you at a genomics workshop. Much of this work could be done on your laptop, but we use instances to simplify workshop setup requirements, and to get you familiar with using -the cloud (a common requirement for working with big data). Visit the Genomics +the cloud (a common requirement for working with big data). Visit the Genomics Workshop setup page for details on getting this instance running on your own, or for the info you need to do this on your own computer.

@@ -482,6 +482,21 @@

Discussion: Your experience

For example, if your URL was ec2.12.2.45.678.compute-1.amazonaws.com, you should enter:

http://ec2.12.2.45.678.compute-1.amazonaws.com:8787
+
+
+ +
+
+

Warning: Browser and VPN usage

+
+

The AWS link may not work for some browsers (e.g. Microsoft Edge). +For those browsers, you may need to copy the link and paste it into your +browser instead of clicking the link in the spreadsheet. Also, if you +are using a VPN, you may need to disconnect in order to reach the +server.

+
+
+
@@ -1042,7 +1057,7 @@

Key Points

"url": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html", "identifier": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html", "dateCreated": "2018-03-12", - "dateModified": "2024-10-02", + "dateModified": "2024-10-03", "datePublished": "2024-10-03" } diff --git a/03-basics-factors-dataframes.html b/03-basics-factors-dataframes.html index 1f48e204..2d837011 100644 --- a/03-basics-factors-dataframes.html +++ b/03-basics-factors-dataframes.html @@ -491,7 +491,7 @@

Exercise: Review the arguments of the -
+

  1. The read.csv() function has the argument ‘header’ set to TRUE by default, this means the function always assumes the first @@ -723,7 +723,7 @@

    Exercise: Revisiting modes and classess

    -
    +

    R @@ -1185,7 +1185,7 @@

    Exercise: Subsetting a data frame

    -
    +
    @@ -1870,7 +1870,7 @@

    Exercise

    -
    +

    R @@ -2016,7 +2016,7 @@

    Exercise: Putting it all together - data frames

    -
    +

    R diff --git a/06-data-visualization.html b/06-data-visualization.html index f78ff97d..da55627d 100644 --- a/06-data-visualization.html +++ b/06-data-visualization.html @@ -953,7 +953,7 @@

    Challenge

    -
    +

    R @@ -1048,7 +1048,7 @@

    Challenge

    -
    +

    R @@ -1095,7 +1095,7 @@

    Challenge

    -
    +

    R @@ -1140,7 +1140,7 @@

    Challenge

    -
    +

    R diff --git a/aio.html b/aio.html index 244be831..f47d2300 100644 --- a/aio.html +++ b/aio.html @@ -394,7 +394,7 @@

    Content from Introducing R and RStudio IDE

    -

    Last updated on 2024-10-02 | +

    Last updated on 2024-10-03 | Edit this page

    @@ -454,7 +454,7 @@

    Tip: This lesson works best on the cloud

    virtual machine instances provided to you at a genomics workshop. Much of this work could be done on your laptop, but we use instances to simplify workshop setup requirements, and to get you familiar with using -the cloud (a common requirement for working with big data). Visit the Genomics +the cloud (a common requirement for working with big data). Visit the Genomics Workshop setup page for details on getting this instance running on your own, or for the info you need to do this on your own computer.

    @@ -531,6 +531,21 @@

    Discussion: Your experience

    For example, if your URL was ec2.12.2.45.678.compute-1.amazonaws.com, you should enter:

    http://ec2.12.2.45.678.compute-1.amazonaws.com:8787
    +
    +
    + +
    +
    +

    Warning: Browser and VPN usage

    +
    +

    The AWS link may not work for some browsers (e.g. Microsoft Edge). +For those browsers, you may need to copy the link and paste it into your +browser instead of clicking the link in the spreadsheet. Also, if you +are using a VPN, you may need to disconnect in order to reach the +server.

    +
    +
    +
    @@ -3095,7 +3110,7 @@

    Exercise: Review the arguments of the -
    +

    1. The read.csv() function has the argument ‘header’ @@ -3334,7 +3349,7 @@

      Exercise: Revisiting modes and classess

      -
      +

      R @@ -3806,7 +3821,7 @@

      Exercise: Subsetting a data frame

      -
      +
      @@ -4513,7 +4528,7 @@

      Exercise

      -
      +

      R @@ -4665,7 +4680,7 @@

      Exercise: Putting it all together - data frames

      -
      +

      R @@ -6856,7 +6871,7 @@

      Challenge

      -
      +

      R @@ -6954,7 +6969,7 @@

      Challenge

      -
      +

      R @@ -7004,7 +7019,7 @@

      Challenge

      -
      +

      R @@ -7052,7 +7067,7 @@

      Challenge

      -
      +

      R diff --git a/index.html b/index.html index 3c7fe35d..3fbcf804 100644 --- a/index.html +++ b/index.html @@ -430,7 +430,7 @@

      Windows

      -
      +

      Follow the CRAN instructions for downloading the Windows Binary

      @@ -446,7 +446,7 @@

      Mac OS X

      -
      +

      Follow the CRAN instructions for downloading the MacOS .pkg file; ensure that you download the package that corresponds to your Mac CPU @@ -464,7 +464,7 @@

      Linux

      -
      +

      Follow the CRAN instructions for your Linux Distribution; The instructions for Ubuntu are found here.

      diff --git a/instructor/00-introduction.html b/instructor/00-introduction.html index a0096a51..219d0fcb 100644 --- a/instructor/00-introduction.html +++ b/instructor/00-introduction.html @@ -355,7 +355,7 @@

      Introducing R and RStudio IDE

      -

      Last updated on 2024-10-02 | +

      Last updated on 2024-10-03 | Edit this page

      @@ -417,7 +417,7 @@

      Tip: This lesson works best on the cloud

      virtual machine instances provided to you at a genomics workshop. Much of this work could be done on your laptop, but we use instances to simplify workshop setup requirements, and to get you familiar with using -the cloud (a common requirement for working with big data). Visit the Genomics +the cloud (a common requirement for working with big data). Visit the Genomics Workshop setup page for details on getting this instance running on your own, or for the info you need to do this on your own computer.

      @@ -484,6 +484,21 @@

      Discussion: Your experience

      For example, if your URL was ec2.12.2.45.678.compute-1.amazonaws.com, you should enter:

      http://ec2.12.2.45.678.compute-1.amazonaws.com:8787
      +
      +
      + +
      +
      +

      Warning: Browser and VPN usage

      +
      +

      The AWS link may not work for some browsers (e.g. Microsoft Edge). +For those browsers, you may need to copy the link and paste it into your +browser instead of clicking the link in the spreadsheet. Also, if you +are using a VPN, you may need to disconnect in order to reach the +server.

      +
      +
      +
      @@ -1044,7 +1059,7 @@

      Key Points

      "url": "https://datacarpentry.github.io/genomics-r-intro/instructor/00-introduction.html", "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/00-introduction.html", "dateCreated": "2018-03-12", - "dateModified": "2024-10-02", + "dateModified": "2024-10-03", "datePublished": "2024-10-03" } diff --git a/instructor/03-basics-factors-dataframes.html b/instructor/03-basics-factors-dataframes.html index 7f0820c9..134fd9d0 100644 --- a/instructor/03-basics-factors-dataframes.html +++ b/instructor/03-basics-factors-dataframes.html @@ -493,7 +493,7 @@

      Exercise: Review the arguments of the -
      +

      1. The read.csv() function has the argument ‘header’ set to TRUE by default, this means the function always assumes the first @@ -725,7 +725,7 @@

        Exercise: Revisiting modes and classess

        -
        +

        R @@ -1187,7 +1187,7 @@

        Exercise: Subsetting a data frame

        -
        +
        @@ -1872,7 +1872,7 @@

        Exercise

        -
        +

        R @@ -2018,7 +2018,7 @@

        Exercise: Putting it all together - data frames

        -
        +

        R diff --git a/instructor/06-data-visualization.html b/instructor/06-data-visualization.html index ac00467d..1cca78f3 100644 --- a/instructor/06-data-visualization.html +++ b/instructor/06-data-visualization.html @@ -955,7 +955,7 @@

        Challenge

        -
        +

        R @@ -1050,7 +1050,7 @@

        Challenge

        -
        +

        R @@ -1097,7 +1097,7 @@

        Challenge

        -
        +

        R @@ -1142,7 +1142,7 @@

        Challenge

        -
        +

        R diff --git a/instructor/aio.html b/instructor/aio.html index 29ce0815..a4e1ab11 100644 --- a/instructor/aio.html +++ b/instructor/aio.html @@ -396,7 +396,7 @@

        Content from Introducing R and RStudio IDE

        -

        Last updated on 2024-10-02 | +

        Last updated on 2024-10-03 | Edit this page

        Estimated time: 45 minutes

        @@ -457,7 +457,7 @@

        Tip: This lesson works best on the cloud

        virtual machine instances provided to you at a genomics workshop. Much of this work could be done on your laptop, but we use instances to simplify workshop setup requirements, and to get you familiar with using -the cloud (a common requirement for working with big data). Visit the Genomics +the cloud (a common requirement for working with big data). Visit the Genomics Workshop setup page for details on getting this instance running on your own, or for the info you need to do this on your own computer.

        @@ -534,6 +534,21 @@

        Discussion: Your experience

        For example, if your URL was ec2.12.2.45.678.compute-1.amazonaws.com, you should enter:

        http://ec2.12.2.45.678.compute-1.amazonaws.com:8787
        +
        +
        + +
        +
        +

        Warning: Browser and VPN usage

        +
        +

        The AWS link may not work for some browsers (e.g. Microsoft Edge). +For those browsers, you may need to copy the link and paste it into your +browser instead of clicking the link in the spreadsheet. Also, if you +are using a VPN, you may need to disconnect in order to reach the +server.

        +
        +
        +
        @@ -3101,7 +3116,7 @@

        Exercise: Review the arguments of the -
        +

        1. The read.csv() function has the argument ‘header’ @@ -3340,7 +3355,7 @@

          Exercise: Revisiting modes and classess

          -
          +

          R @@ -3812,7 +3827,7 @@

          Exercise: Subsetting a data frame

          -
          +
          @@ -4519,7 +4534,7 @@

          Exercise

          -
          +

          R @@ -4671,7 +4686,7 @@

          Exercise: Putting it all together - data frames

          -
          +

          R @@ -6865,7 +6880,7 @@

          Challenge

          -
          +

          R @@ -6963,7 +6978,7 @@

          Challenge

          -
          +

          R @@ -7013,7 +7028,7 @@

          Challenge

          -
          +

          R @@ -7061,7 +7076,7 @@

          Challenge

          -
          +

          R diff --git a/instructor/index.html b/instructor/index.html index 24c15627..df9c52b5 100644 --- a/instructor/index.html +++ b/instructor/index.html @@ -514,7 +514,7 @@

          Windows

          -
          +

          Follow the CRAN instructions for downloading the Windows Binary

          @@ -530,7 +530,7 @@

          Mac OS X

          -
          +

          Follow the CRAN instructions for downloading the MacOS .pkg file; ensure that you download the package that corresponds to your Mac CPU @@ -548,7 +548,7 @@

          Linux

          -
          +

          Follow the CRAN instructions for your Linux Distribution; The instructions for Ubuntu are found here.

          diff --git a/md5sum.txt b/md5sum.txt index 5b982585..705d8134 100644 --- a/md5sum.txt +++ b/md5sum.txt @@ -3,7 +3,7 @@ "LICENSE.md" "b24ebbb41b14ca25cf6b8216dda83e5f" "site/built/LICENSE.md" "2024-10-02" "config.yaml" "b91cd97fa3b408bd1ac0a00e67ab3219" "site/built/config.yaml" "2024-10-02" "index.md" "7f9c30e6487338a0c3f8ecc4018873ab" "site/built/index.md" "2024-10-02" -"episodes/00-introduction.Rmd" "e1354ed92fb458179c8c00b00ee1cf55" "site/built/00-introduction.md" "2024-10-02" +"episodes/00-introduction.Rmd" "03f55a33cafd3e5f3b407315c509a389" "site/built/00-introduction.md" "2024-10-03" "episodes/01-r-basics.Rmd" "c9e52db6d25e0b716fce903bdf9d3ee8" "site/built/01-r-basics.md" "2024-10-02" "episodes/02-data-prelude.Rmd" "ab2b1fd3cdaae919f9e409f713a0a8ad" "site/built/02-data-prelude.md" "2024-10-02" "episodes/03-basics-factors-dataframes.Rmd" "4bc13796e4b76014de51541cce671ea5" "site/built/03-basics-factors-dataframes.md" "2024-10-03" diff --git a/pkgdown.yml b/pkgdown.yml index 3ac33744..9ace3fae 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,4 +2,4 @@ pandoc: 3.1.11 pkgdown: 2.1.1 pkgdown_sha: ~ articles: {} -last_built: 2024-10-03T18:12Z +last_built: 2024-10-03T18:15Z