diff --git a/networks/species-pathways/sparql/species-pathways-proteins.md b/networks/species-pathways/sparql/species-pathways-proteins.md
index 63ff7da..45f06c9 100644
--- a/networks/species-pathways/sparql/species-pathways-proteins.md
+++ b/networks/species-pathways/sparql/species-pathways-proteins.md
@@ -4,88 +4,6 @@
* UniProt (better): https://sparql.uniprot.org/sparql
-# Wnt signaling pathway (GO:0016055)
-
-* URI: https://amigo.geneontology.org/amigo/term/GO:0016055
-
-## All superclasses of the pathway
-
-~~~sparql
-PREFIX obo:
-PREFIX rdfs:
-
-SELECT DISTINCT ?super ?labels
-WHERE {
- obo:GO_0016055 rdfs:subClassOf ?super .
- ?super rdfs:label ?labels .
-}
-~~~
-
-## All subclasses of the pathway
-
-~~~sparql
-PREFIX obo:
-PREFIX rdfs:
-
-SELECT DISTINCT ?sub ?label
-WHERE {
- ?sub rdfs:subClassOf obo:GO_0016055 .
- ?sub rdfs:label ?label .
-}
-~~~
-
-## All properties and objects related to the pathway
-
-~~~sparql
-PREFIX obo:
-
-SELECT DISTINCT ?property ?object
-WHERE {
- obo:GO_0016055 ?property ?object .
-}
-~~~
-
-## All subjects and properties related to the pathway
-
-~~~sparql
-PREFIX obo:
-
-SELECT DISTINCT ?subject ?property
-WHERE {
- ?subject ?property obo:GO_0016055 .
-}
-~~~
-
-## All subjects (URI and label) classified with the pathway
-
-~~~sparql
-PREFIX rdfs:
-PREFIX obo:
-PREFIX up_core:
-
-SELECT DISTINCT ?uri ?label
-WHERE {
- ?uri up_core:classifiedWith obo:GO_0016055 .
- ?uri rdfs:label ?label .
-}
-~~~
-
-## All proteins (URI and label) classified with the pathway
-
-~~~sparql
-PREFIX rdf:
-PREFIX rdfs:
-PREFIX obo:
-PREFIX up_core:
-
-SELECT DISTINCT ?protein ?label
-WHERE {
- ?protein up_core:classifiedWith obo:GO_0016055 .
- ?protein rdf:type up_core:Protein .
- ?protein rdfs:label ?label .
-}
-~~~
-
# PRICKLE2 - Prickle-like protein 2 (UniProtKB:Q7Z3G6)
* URI: http://purl.uniprot.org/uniprot/Q7Z3G6
@@ -151,7 +69,7 @@ http://purl.obolibrary.org/obo/GO_0060071,"Wnt signaling pathway, planar cell po
PREFIX up:
PREFIX up_core:
-SELECT DISTINCT ?protein ?taxon ?scientific_name
+SELECT DISTINCT ?taxon ?scientific_name
WHERE {
up:Q7Z3G6 up_core:organism ?taxon .
?taxon up_core:scientificName ?scientific_name .
@@ -224,6 +142,86 @@ WHERE {
# Wnt signaling pathway (GO:0016055)
+* URI: https://amigo.geneontology.org/amigo/term/GO:0016055
+
+## All superclasses of the pathway
+
+~~~sparql
+PREFIX obo:
+PREFIX rdfs:
+
+SELECT DISTINCT ?super ?labels
+WHERE {
+ obo:GO_0016055 rdfs:subClassOf ?super .
+ ?super rdfs:label ?labels .
+}
+~~~
+
+## All subclasses of the pathway
+
+~~~sparql
+PREFIX obo:
+PREFIX rdfs:
+
+SELECT DISTINCT ?sub ?label
+WHERE {
+ ?sub rdfs:subClassOf obo:GO_0016055 .
+ ?sub rdfs:label ?label .
+}
+~~~
+
+## All properties and objects related to the pathway
+
+~~~sparql
+PREFIX obo:
+
+SELECT DISTINCT ?property ?object
+WHERE {
+ obo:GO_0016055 ?property ?object .
+}
+~~~
+
+## All subjects and properties related to the pathway
+
+~~~sparql
+PREFIX obo:
+
+SELECT DISTINCT ?subject ?property
+WHERE {
+ ?subject ?property obo:GO_0016055 .
+}
+~~~
+
+## All subjects (URI and label) classified with the pathway
+
+~~~sparql
+PREFIX rdfs:
+PREFIX obo:
+PREFIX up_core:
+
+SELECT DISTINCT ?uri ?label
+WHERE {
+ ?uri up_core:classifiedWith obo:GO_0016055 .
+ ?uri rdfs:label ?label .
+}
+~~~
+
+## All proteins (URI and label) classified with the pathway
+
+~~~sparql
+PREFIX rdf:
+PREFIX rdfs:
+PREFIX obo:
+PREFIX up_core:
+
+SELECT DISTINCT ?protein ?label
+WHERE {
+ ?protein up_core:classifiedWith obo:GO_0016055 .
+ ?protein rdf:type up_core:Protein .
+ ?protein rdfs:label ?label .
+}
+~~~
+
## All proteins classified with the pathway and their organism with the scientific name
~~~sparql
diff --git a/networks/species-pathways/sparql/species-pathways-proteins.sparql b/networks/species-pathways/sparql/species-pathways-proteins.sparql
index 08971ff..41e9414 100644
--- a/networks/species-pathways/sparql/species-pathways-proteins.sparql
+++ b/networks/species-pathways/sparql/species-pathways-proteins.sparql
@@ -4,77 +4,6 @@
* UniProt (better): https://sparql.uniprot.org/sparql
-# Wnt signaling pathway (GO:0016055)
-# ----------------------------------
-
-* URI: https://amigo.geneontology.org/amigo/term/GO:0016055
-
-# All superclasses of the pathway
-
-PREFIX obo:
-PREFIX rdfs:
-
-SELECT DISTINCT ?super ?labels
-WHERE {
- obo:GO_0016055 rdfs:subClassOf ?super .
- ?super rdfs:label ?labels .
-}
-
-# All subclasses of the pathway
-
-PREFIX obo:
-PREFIX rdfs:
-
-SELECT DISTINCT ?sub ?label
-WHERE {
- ?sub rdfs:subClassOf obo:GO_0016055 .
- ?sub rdfs:label ?label .
-}
-
-# All properties and objects related to the pathway
-
-PREFIX obo:
-
-SELECT DISTINCT ?property ?object
-WHERE {
- obo:GO_0016055 ?property ?object .
-}
-
-# All subjects and properties related to the pathway
-
-PREFIX obo:
-
-SELECT DISTINCT ?subject ?property
-WHERE {
- ?subject ?property obo:GO_0016055 .
-}
-
-# All subjects (URI and label) classified with the pathway
-
-PREFIX rdfs:
-PREFIX obo:
-PREFIX up_core:
-
-SELECT DISTINCT ?uri ?label
-WHERE {
- ?uri up_core:classifiedWith obo:GO_0016055 .
- ?uri rdfs:label ?label .
-}
-
-# All proteins (URI and label) classified with the pathway
-
-PREFIX rdf:
-PREFIX rdfs:
-PREFIX obo:
-PREFIX up_core:
-
-SELECT DISTINCT ?protein ?label
-WHERE {
- ?protein up_core:classifiedWith obo:GO_0016055 .
- ?protein rdf:type up_core:Protein .
- ?protein rdfs:label ?label .
-}
-
# PRICKLE2 - Prickle-like protein 2 (UniProtKB:Q7Z3G6)
# ----------------------------------------------------
@@ -150,8 +79,6 @@ WHERE {
?gene rdfs:label ?label .
}
-
-
# Wnt signaling pathway, planar cell polarity pathway (GO:0060071)
# ----------------------------------------------------------------
@@ -200,6 +127,74 @@ WHERE {
# Wnt signaling pathway (GO:0016055)
# ----------------------------------
+* URI: https://amigo.geneontology.org/amigo/term/GO:0016055
+
+# All superclasses of the pathway
+
+PREFIX obo:
+PREFIX rdfs:
+
+SELECT DISTINCT ?super ?labels
+WHERE {
+ obo:GO_0016055 rdfs:subClassOf ?super .
+ ?super rdfs:label ?labels .
+}
+
+# All subclasses of the pathway
+
+PREFIX obo:
+PREFIX rdfs:
+
+SELECT DISTINCT ?sub ?label
+WHERE {
+ ?sub rdfs:subClassOf obo:GO_0016055 .
+ ?sub rdfs:label ?label .
+}
+
+# All properties and objects related to the pathway
+
+PREFIX obo:
+
+SELECT DISTINCT ?property ?object
+WHERE {
+ obo:GO_0016055 ?property ?object .
+}
+
+# All subjects and properties related to the pathway
+
+PREFIX obo:
+
+SELECT DISTINCT ?subject ?property
+WHERE {
+ ?subject ?property obo:GO_0016055 .
+}
+
+# All subjects (URI and label) classified with the pathway
+
+PREFIX rdfs:
+PREFIX obo:
+PREFIX up_core:
+
+SELECT DISTINCT ?uri ?label
+WHERE {
+ ?uri up_core:classifiedWith obo:GO_0016055 .
+ ?uri rdfs:label ?label .
+}
+
+# All proteins (URI and label) classified with the pathway
+
+PREFIX rdf:
+PREFIX rdfs:
+PREFIX obo:
+PREFIX up_core:
+
+SELECT DISTINCT ?protein ?label
+WHERE {
+ ?protein up_core:classifiedWith obo:GO_0016055 .
+ ?protein rdf:type up_core:Protein .
+ ?protein rdfs:label ?label .
+}
+
# All proteins classified with the pathway and their organism with the scientific name
PREFIX rdfs: