input and target size mismatch when running test.lua

[MaYB2333]

Hi Dave!
Sorry to interrupt you. I wanted to run this impressive pipeline but was stuck in an error. I haven't tried to train a new network yet and all data were downloaded from your dropbox directly. But when I run basset_test.lua, it occured that:

[myb@localhost ~]$ cd ./Basset/src
[myb@localhost src]$ basset_test.lua ../data/models/pretrained_model.th ../data/encode_roadmap.h5 ../data
/home/myb/torch/install/bin/lua: /home/myb/torch/install/share/lua/5.2/nn/BCECriterion.lua:24: input and target size mismatch
stack traceback:
[C]: in function 'assert'
/home/myb/torch/install/share/lua/5.2/nn/BCECriterion.lua:24: in function </home/myb/torch/install/share/lua/5.2/nn/BCECriterion.lua:22>
(...tail calls...)
./convnet.lua:1156: in function 'test'
/home/myb/Basset/src/basset_test.lua:75: in main chunk
[C]: in function 'dofile'
.../myb/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:150: in main chunk
[C]: in ?

Would you mind telling me what may lead to it and what I should do? Thanks a lot

[davek44]

It looks like the sequence lengths are mismatched. What steps did you use to generate the encode_roadmap.h5 file? I just ran the steps here https://github.com/davek44/Basset/blob/master/install_data.py, and it worked for me.

[MaYB2333]

Well the networks in China are isolated partly so the server can't reach dropbox, run install_data.py and download the data. So I have to download the data manually and may be the error occured. Are there some ways to get the data avoiding the dropbox?

[davek44]

Can you access Google Cloud storage?

On Fri, May 17, 2019 at 7:32 PM ThuMYB ***@***.***> wrote: Well the networks in China are isolated partly so the server can't reach dropbox, run install_data.py and download the data. So I have to download the data manually and may be the error occured. Are there some ways to get the data avoiding the dropbox? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#46?email_source=notifications&email_token=AABKFEGICCXAGAHSYLZAI73PV5TEJA5CNFSM4HNPBCA2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODVWGAWY#issuecomment-493641819>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AABKFEF2N56NYB7MJDCHTETPV5TEJANCNFSM4HNPBCAQ> .

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