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Welcome to the web page for the 34th Project Week!

The 34th NA-MIC Project Week was held virtually December 14-18, 2020.

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.

Logistics

Agenda

Note: Zoom Rooms Open at 11am EST and Project Presentations Start at 12noon EST on MONDAY

<iframe src="https://calendar.google.com/calendar/embed?src=kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com&ctz=Atlantic&mode=WEEK&dates=20201214%2f20201218" style="border: 0" width="800" height="600" frameborder="0" scrolling="no"></iframe>

How to add this calendar to your own?

Notes on the agenda:

  • The format of this virtual event will be different from the in-person ones.
  • Monday's session will include:
    • 5-minute project presentations that include demos (for each of the projects listed below)
    • Approximately 1:45 of presentations with a 10 min break after the 10th presentation
    • An optional breakout session
  • Tuesday's session will be a discussion about
    • Features in 3D Slicer that are new since the last Project Week
    • Design considerations that are relevant for end-to-end solutions (or customizable Slicer apps).
  • Wednesday's session question and answer session about 3D Slicer for users and developers, a "live" version of what takes place asynchronously on the Slicer discourse forum. See discussed questions and answers here.
  • Thursday's session will be a discussion on recent advancing in the web and cloud technologies that are being used to create browser based visualization applications and large open databases.
  • Friday's session will be a training workshop focused on fostering partnerships with researchers and clinicians in Western Africa.
  • The detailed program for each session is available from the link in the embedded Google Calendar above.
  • In addition to the scheduled presentations, projects may create separate breakout sessions to work in small groups after the end of the main session
    • Presenters and participants may use the chat function during the main session to request a breakout session with the designated person
    • A few breakout sessions have already been planned (see Breakout Sessions section below)

Project Presentations for Monday (How to add a new project?)

  1. SlicerSALT: Shape analysis (Beatriz Paniagua, Kitware)
  2. SlicerHeart (Andras Lasso)
  3. SlicerIGT and AIGT (Tamas Ungi)
  4. SlicerMorph: An open and extensible platform to retrieve, visualize and analyze 3D morphology (Sara Rolfe)
  5. SlicerCMF: Craniofacial image processing (David Allemang)
  6. SlicerArduino (video) (Paolo Zaffino, Maria Francesca Spadea)
  7. PRISM volume rendering (Simon Drouin)
  8. Virtual reality (Csaba Pinter)
  9. SlicerWeb and Slicer in Cloud environments (Steve Pieper, Theodore Aptekarev)
  10. Napari: multi-dimensional image viewer for python (Nicholas Sofroniew)

10-minute BREAK

  1. XNAT - OHIF (Dan Marcus)
  2. MONAI: PyTorch-based, open-source framework for deep learning in healthcare imaging (Tina Kapur for Stephen Aylward)
  3. NCI Imaging Data Commons (Andrey Fedorov,Steve Pieper, Ron Kikinis)
  4. aevaSlicer volumetric mesh generation from segmentations (Sam Horvath)
  5. Landmark Curves for Brain Images (Jarrett Rushmore, BWH/MGH/BU, Sylvain Bouix, BWH/HMS, Nikos Makris, BWH/MGH/HMS, Kyle Sunderland, Queen's University, Andras Lasso, Queen's University)
  6. RadOncSegmentor Segmentation for Radiation Treatment Planning (Aditya Apte, Eve LoCastro, Harini Veeraraghavan, MSKCC)
  7. Scalable Quality Assurance for Neuroimaging (SQAN) (Arvind Gopu)
  8. Train the Trainers formation program with African countries: training & anatomical atlases (Juan Ruiz, Asmaa Skareb, Marilola Afonso, Nasara Cabrera Abu, Tagwa Idris, Septy Inge, Otman Aghzout, Babacar Diao, Alexandra Fernandes, Badiaa Ait Ahmed, Nayra Pumar)
  9. SlicerLiverAnalysis (Rafael Palomar OUS,NTNU. Ole Vegard Solberg, SINTEF)
  10. MICUDA - Generalized Entropy MI Registration (Luiz Otavio Murta, Vinicius Pavanelli Vianna)
  11. TRAKO (Daniel Haehn, Steve Pieper, Lauren O'Donnell, Yogesh Rathi))
  12. Slicer Training - DICOM (Sonia Pujol)
  13. Slicer + Looking Glass Factory's Holographic Display (Jean-Christophe Fillion-Robin, Stephen Aylward)
  14. Open Anatomy (Mike Halle et. al.)

Breakout Sessions:

To learn how to join, leave or display list of breakout rooms. See here.

  1. Monday @ 3pm Ultrasound Image Guided Therapy (Tamas Ungi, Tina Kapur, Simon Drouin)
  2. Tuesday @ 11am Collaborative VR discussion (Csaba Pinter and Simon Drouin)
  3. Wednesday @ 11am EST Project/Room 10 & 11: Dan Marcus, XNAT + OHIF
  4. Wednesday @ 11am: Project 15 Landmark Curves for Brain Images  (Jarrett Rushmore, Kyle Sunderland)
  5. Wednesday @ 2pm. Project 12 MONAI: PyTorch-based, open-source framework for deep learning in healthcare imaging (Stephen Aylward)
  6. Thursday @ 11am. Segmentation import/export/storage (Andras Lasso)
  7. Thursday @ 2pm Image segmentation clinicBring your own segmentation problem or learn from how we solve others'(Andras Lasso)

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration. Register here.

List of registered participants so far (names will be added here after processing registrations):

  1. Simon Drouin , École de technologie supérieure (ETS Montreal) , QC , Canada
  2. Tina Kapur , Brigham and Women's Hospital and Harvard Medical School , MA , USA
  3. Nadya Shusharina , Massachusetts General Hospital , MA , USA
  4. Salim Kanoun , Institut Claudius Regaud - Toulouse , Occitanie , France
  5. Hans Johnson , University of Iowa , IA , USA
  6. Steve Pieper , Isomics, Inc. , Massachusetts , USA
  7. Csaba Pintér , Ebatinca S.L., Pixel Medical Inc. , Las Palmas , Spain
  8. Saima Safdar , University of western australia , WA , Australia
  9. Alexandra Golby , Brigham and Women’s hospital and Harvard Medical School , MA , USA
  10. Randy Gollub , MGH , MA , USA
  11. Simon Oxenford , Charité – Universitätsmedizin Berlin , Berlin , Germany
  12. Sonia Pujol , Brigham and Women's Hospital, Harvard Medical School , MA , USA
  13. Sylvain Bouic , Brigham and Women's Hospital , MA , USA
  14. Khalid Al Orabi , King abdullah medical city , Makkah , Saudi Arabia
  15. Andrey Fedorov , Brigham and Women's Hospital , MA , USA
  16. Farah Alkhatib , University of Western Australia , Western Australia , Australia
  17. Dhruv Kool Rajamani , Worcester Polytechnic Institute , Massachusetts , USA
  18. Adam Wittek , Intelligent Systems for Medicine Laboratory, The University of Western Australia , Western Australia , Australia
  19. Matthew Toews , École de Technologie Supérieure , QC , Canada
  20. Vivian Monezi Tetzner , USP-FFCLRP , SP , Brazil
  21. Samantha Horvath , Kitware , North Carolina , USA
  22. Rafael Palomar , Oslo University Hospital , Norway , Norway
  23. Paolo Zaffino , Magna Graecia University of Catanzaro , Catanzaro , Italy
  24. Michael Young , Indiana University , IN , USA
  25. Arvind Gopu , Indiana University , Indiana , USA
  26. Attila Nagy , University of Szeged , N/A , Hungary
  27. Curtis Lisle , KnowledgeVis, LLC , FL , USA
  28. Vinicius Pavanelli Vianna , USP - University of Sao Paulo , Sao Paulo , Brazil
  29. NIKOLAOS MAKRIS , MASSACHUSETTS GENERAL HOSPITAL , MASSACHUSETTS , USA
  30. Tamas Ungi , Queen's University , Ontario , Canada
  31. Eve LoCastro , Memorial Sloan Kettering Cancer Center , New York , USA
  32. Ole Vegard Solberg , SINTEF , Trøndelag , Norway
  33. Mehran Azimbagirad , University of Sao Paulo , SP , Brazil
  34. Sara Rolfe , University of Washington , WA , USA
  35. Junichi Tokuda , Brigham and Women's Hospital , MA , USA
  36. Harini Veeraraghavan , Memorial Sloan Kettering Cancer Center , New York , USA
  37. Renzo Phellan Aro , McGill University , QC , Canada
  38. Beatriz Paniagua , Kitware Inc , NC , USA
  39. Theodore Aptekarev , - , - , Russia/Israel
  40. Eleni Siampli , Childrens National Medical Center , DC , USA
  41. Ron Kikinis , Harvard Medical School , Massachusetts , USA
  42. Carl-Fredrik Westin , Harvard Medical School , MA , USA
  43. Lauren J ODonnell , BWH , MA , USA
  44. Raul San Jose , Brigham and Women's Hospital , MA , USA
  45. Julien Finet , Kitware , Rhône-Alpes , France
  46. David Allemang , Kitware Inc , NC , USA
  47. Forrest Li , Kitware, Inc. , NC , USA
  48. Matt McCormick , Kitware , North Carolina , USA
  49. Sarah Frisken , Brigham and Women's Hospital , MA , USA
  50. Jean-Christophe Fillion-Robin , Kitware , North Carolina , USA
  51. Nick Jowkar , Brigham and Women's Hospital , MA , USA
  52. Luiz Murta , University of São Paulo , SP , Brazil
  53. Murat Maga , Seattle Children's Research Institute / University of Washington , Washington , USA
  54. Marco Nolden , German Cancer Research Center (DKFZ) , N/A , Germany
  55. Nayra Pumar Carreras , Universidad de Las Palmas de Gran Canaria , Las Palmas , Spain
  56. khalid Elamin Awad , University of Khartoum, Faculty of Medicine , Khartoum , Sudan
  57. Marie Ndiaye , Université Assane Seck de Ziguinchor , Sénégal , Sénégal
  58. Gregory C. Sharp , Massachusetts General Hospital , MA , USA
  59. David García-Mato , Universidad Carlos III de Madrid , Madrid , Spain
  60. Samba NDIAYE , CHEIKH ANTA DIOP UNIVERSITY , SENEGAL , Sénégal
  61. Ahmed Temtam , Old Dominion University , VA , USA
  62. Jared Vicory , Kitware , North Carolina , USA
  63. Daniel Haehn , University of Massachusetts Boston , Massachusetts , USA
  64. Jarrett Rushmore , Boston University, Brigham and Women's Hospital, MGH , MA , USA
  65. Tagwa Idris , Massachusetts General Hospital , MA , USA
  66. Fathelrahman Idris Gasmelseed Ali , University of Khartoum, Faculty of medicine , Khartoum , Sudan
  67. EL Tahir Ahmed EL Tahir , University of Alfashir , North Darfur , Sudan
  68. Abdelmajed Manna , Department of Anatomy, university of Alfashir , North Darfur , Sudan
  69. Noureldeen abaker , Uorolgy resident , South Darfur , Sudan
  70. Mahil Mohamed Sharief Abdalla , Department of Anatomy, Faculty of Medicine, University of Khartoum , Khartoum , Sudan
  71. Haythem Mohammed Gorshi Ahmed , University of Khartoum , Khartoum , Sudan
  72. Abuzar Mubarak Omer Osman , Ondokuz mayıs üniversity OMÜ , black sea , Turkey
  73. Ehab Mohammed Rabie Abd Allah , Cairo University school of medicine , Khartoum , Sudan
  74. Nicholas Sofroniew , Chan Zuckerberg Initiative , CA , USA
  75. Osama Mohammed Ahmed Mohammed ELNOUR , Faculty of medicine and health scince , North Darfur State , Sudan
  76. Mustafa Bahar , Soba University Hospital , Khartoum , Sudan
  77. Dr.anatomy83@yahoo.com , Prince Sattam bin Abdulaziz University , Riyadh , Saudi Arabia
  78. Abubaker Elssidig Elhaj Bakhit Farg , University of Ha'il. KSA , Ha'il Prevalence , Saudi Arabia
  79. Pape Mady THIAO , École militaire de santé de Dakar , SÉNÉGAL , Sénégal
  80. Elsadig Suleiman Adam , Nyala Specialized Hospital , South Darfur , Sudan
  81. Juan Ruiz-Alzola , University of Las Palmas de Gran Canaria , Canarias , Spain
  82. Idafen Santana , Las Palmas de Gran Canaria University , Canary Islands , Spain
  83. NORALDAIM AHMED FADOL MOHAMMED , Ministry of health , Darfor , Sudan
  84. Leila omer adam Ahmed , University of al fashir , North Darfur , Sudan
  85. Babacar DIAO , Cheikh Anta DIOP University , Senegal , Sénégal
  86. Khaly / TALL , Ecole Supérieure Polytechnique de Dakar , Sénégal , Sénégal
  87. Idy , École Supérieure Polytechnique , Senegal , Sénégal
  88. Stephen Aylward , Kitware , NC , USA
  89. Selly Suzuki , São Leopoldo Mandic , Sao Paulo , Brazil
  90. Haythem Guermazi , Faculté de Médecine de L'université de Nouakchott Al Aasriya Mauritania , Nouakchott , Mauritania
  91. William Wells , BWH , Massachusetts , USA
  92. Christian Herz , Children's Hospital of Philadelphia , Pennsylvania , USA
  93. Mamadou Samba CAMARA , Ecole Supérieure Polytechnique / University of Dakar , Senegal , Sénégal
  94. Michal Brzus , University of Iowa , IA , USA
  95. Wafa Nour , Khartoum breast care center , Khartoum , Sudan
  96. Izabel Rubira-Bullen , University Sao Paulo , Sao Paulo , Brazil
  97. Tim Olsen , Radiologics , IL , USA
  98. Blake Griggs , Radiologics, Inc , CA , USA
  99. Amadou Gabriel Ciss , université cheikh anta diop , senegal , Sénégal
  100. Idris Ahmed Abaker Ibrahim , Alfasher University faculty of medicine , NORTH DARFUR , Sudan
  101. SOW NDEYE FATOU , UCAD , DAKAR , Sénégal
  102. Souleymane Diatta , chu fann , dakar , Sénégal
  103. Momar Sokhna Diop , Cheikh Anta Diop University , Senegal , Sénégal
  104. Dan Marcus , Washington Universituy , MO , USA
  105. PAPA SALMANE BA , UCAD , Sénégal , Sénégal
  106. armin , medken , wa , USA
  107. Salah osman salah , Rick , Khartoum , Sudan
  108. Aya Zakareya Noor Hamid , Haj Al Safi Hospital , Khartoum , Sudan
  109. Shiraz Yousif , University of khartoum , NSW , Australia
  110. Assane Ndiaye , Université Assane Seck , Senegal , Sénégal
  111. Kamal Eldeen Mohammed Ibrahim Dahab , University of Khartoum , Khartoum , Sudan
  112. Asmaa Skareb , Canary Islands Institute of Technology , Gran Canaria , Spain
  113. Manjula , Malmö University , Skane , Sweden
  114. Michela Destito , Magna Graecia University of Catanzaro , Italy , Italy
  115. Souleymane Diao , Université Cheikh Anta Diop , Sénégal , Sénégal
  116. Geir Arne Tangen , SINTEF , Trondheim , Norway
  117. Mohammed Nimir , University Hospital Coventry and Warwickshire , West Midlands , UK
  118. Marwan Ahmed , St. George’s University , Saint George’s , Grenada
  119. Elimam Elghazali Siddig Mohamed Mustafa , University of Khartoum , Khartoum , Sudan
  120. Badiaa AIT AHMED , University Abdelmalek Essaâdi , North Africa , Morocco
  121. Rabab SEDRATI , ABDELMALEK ESAADI UNIVERSITY , North of Africa , Morocco
  122. Ahmedou Moulaye IDRISS , Faculty of Medicine University of Nouakchott Al Aasriya , Mauritania , Mauritania
  123. Mohamed bamba hbedy , Faculté médecine Nouakchott , Nouakchott , Mauritania
  124. EL FARAZE Mohammed , ABDELMALEK ESAADI UNIVERSITY , NORTH OF AFRICA , Morocco
  125. Kyle Sunderland , Queen's University , Ontario , Canada
  126. EL GUERI Jaouad , ENSA Tétouan , North of Africa , Morocco
  127. Otman AGHZOUT , University Abdelmalek Essaedi , North Africa , Morocco
  128. Andras Lasso , PerkLab, Queen's University , ON , Canada
  129. Pedro Moreira , Brigham and Women's Hospital , MA , USA
  130. Dr. Gargi Jani , National forensic sciences university , Gujarat , India
  131. Anita Carolina Ribeiro , FOUSP , São Paulo , Brazil
  132. Daniele Piccolo , Nucleode SRL, University of Padua , UD , Italy
  133. David Manso Arcediano , Cella Medical Solutions , Murcia , Spain
  134. Mohamed aly Dedew , Faculty of medecine of Nouakchott , Nouakchott , Mauritania
  135. Miguel Xochicale , King's College London , London , UK
  136. Mahomed Sidique Abdul Cadar Dada , Uem , Maputo , Moçambique
  137. Tasos Raptis , National Technical University of Athens , Attiki , Greece
  138. María Dolores Afonso Suárez , Universidad de Las Palmas de Gran Canaria , Canary Islands , Spain
  139. Simon Doran , Institute of Cancer Research , Surrey , UK
  140. Elameen Adam , University of Bahri , Khartoum , Sudan
  141. Fatima Elnagieb Adam Gamereldien , Nyala Teaching hospital , South Darfour , Sudan
  142. Rafael Pineda Reyes , University of Cordoba , Cordoba , Spain
  143. Blanca Zufiria Gerbolés , Vicomtech , guipuzkoa , Spain
  144. Mohammed Eltahir , University of Bahri , Khartoum , Sudan
  145. Godwin Wunpiini Yiddi , Kwame Nkrumah University of Science and Technology , Ashanti Region , Ghana
  146. Kate Alpert , Radiologics , CO , USA
  147. Gordon Harris , Massachusetts General Hospital , MA , USA
  148. Supriya Somarouthu , Massachusetts General Hospital , Massachusetts , USA
  149. Awa NDIAYE SY , Université Cheikh Anta Diop de Dakar - Faculté de Médecine, de Pharmacie et d'Odontologie , SENEGAL , Sénégal
  150. Aditya Apte , Memorial Sloan Kettering Cancer Center , New York , USA
  151. Andrea Avena-Koenigsberger , Indiana University , INDIANA , USA
  152. Juan Carlos Prieto , UNC , North Carolina , USA
  153. Michael Halle , Brigham and Women's Hospital , Massachusetts , USA
  154. Marta Vidal-Garcia , University of Calgary , Alberta , Canada
  155. antonietta del bove , UNIVERSITAT ROVIRA I VIRGILI , SPAIN , Spain
  156. Terrie Simmons-Ehrhardt , Virginia Commonwealth University , VA , USA
  157. Arthur Porto , Louisiana state university , LA , USA
  158. Lucia Cevidanes , University of Michigan , MI , USA
  159. Lucas Lo Vercio , University of Calgary , Alberta , Canada
  160. Roozbeh Shams , Polytechnique Montreal , QC , Canada
  161. Eva Zaffarini , University of Calgary , Alberta , Canada
  162. James Dickson , Radiologics Inc , Pennsylvania , USA
  163. Erik Ziegler , Radical Imaging , Rhone-Alpes , France
  164. Mounia Chakkour , Abdelmalek Essaâdi University (ENSA Tetuan) , North Africa , Morocco
  165. Étienne Léger , Concordia University , Québec , Canada
  166. Benedict Kingsford Andam , Kwame Nkrumah University of Science and Technology , Ayeduase , Ghana
  167. Mohammad Alsad , Imperial College London , Cambs , UK
  168. YAHYA TFEIL , faculty of medicine alassriya university mauritaniaania , nouakchott , Mauritania
  169. jonas bianchi , University of the Pacific , California , USA
  170. MOHAMED SABAN , UNIVERSIDAD DE VALENCIA , VALENCIA , Spain
  171. Amdaouch Ibtisam , University of Abdelmalek Essaadi , Tanger-Tetouan , Morocco
  172. Mariela Peralta-Mamani , Bauru School of Dentistry-University of Sao Paulo , SP , Brazil
  173. Ángel Terrero Pérez , Bauru School of Dentistry, University of Sao Paulo , Sao Paulo , Brazil
  174. David Orlando Grajales Lopera , Polytechnique Montreal , Québec , Canada
  175. Alexis Girault , Kitware , NC , USA
  176. Leonardo F Machado , University of São Paulo até Ribeirão Preto , SP , Brazil
  177. Manuel Gustavo Chávez Sevillano , Rio de Janeiro State University , Rio de Janeiro , Brazil
  178. Gabor Fichtinger , Queen's Univ , ON , Canada
  179. Charles Johnson , University of Iowa , Iowa , USA
  180. Morgan Hough , Center17 , CA , USA
  181. Aron Aliaga Del Castillo , Bauru Dental School, University of São Paulo , São Paulo , Brazil
  182. Camila Massaro , University of São Paulo , Sp , Brazil
  183. Wilson Komla , Kwame Nkrumah University of Science and Technology , Ashanti Region , Ghana
  184. Victor Elikem Akpaloo , Kwame Nkrumah University of Science and Technology , Greater Accra Region , Ghana
  185. ABOAGYE, Gifty Takyiwaa , Kwame Nkrumah University of Science and Technology , Ashanti , Ghana
  186. omar sow , université assane seck de ziguinchor , ziguinchor , senegal
  187. Rudolf Bumm , Department of Surgery, Kantonsspital Graubünden , Graubünden , Switzerland
  188. Kelly Diamond , Seattle Children's Research Institute , WA , United States
  189. Autumn Kulaga , CCDC Data & Analysis Center , MD , US
  190. DELEAT-BESSON , University of Michigan , Michigan , United States
  191. Celia LE , University of Michigan , Michigan , United States
  192. Deise Caldas , Malta , Saint Julians , Malta
  193. Steve Moore , Washington University , MO , USA
  194. Cseh Martin , University of Szeged 3D Center , Csongrad , Hungary
  195. Nasara Cabrera Abu , Canary Islands Government , Canary Islands , Spain
  196. Sokhna Astou Gawane Thiam , Université Cheikh Anta Diop , Sénégal , Sénégal
  197. Jasmin Metzger , German Cancer Research Center , BW , Germany
  198. Aron Helser , Kitware , NC , US
  199. Marcela Gurgel , Federal University of Ceara , Ceara , Brazil
  200. Jason Haider , Xenco Medical , California , United States
  201. Jordan Karten , Massachusetts General Hospital , MA , USA
  202. Ron Alkalay , Beth Israel Deaconess Medical Center , MA , US
  203. Parikshit Juvekar , Brigham & Women's Hospital , Massachusetts , USA
  204. Dhiego Bastos , BWH , MA , United States

Statistics

  • 204 registered attendees
  • 26 countries
  • 101 institutions (82 academic, 18 industry, and 1 goverment)