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3.3.2

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@dpryan79 dpryan79 released this 23 Jan 08:20
· 297 commits to master since this release
  • Fixed --yAxisLabel in plotProfile (issue #889)
  • Fixed a small X-axis tick offset issue. This caused the location of tick marks in profile plots to be shifted to the left by 0.5 to 1 bin. This was generally not notable, only really appearing when very few bins (e.g., 4) were used. The issue was mostly that the end tick would appear after the end of the plot, since its coordinate was the end of the bin. (issue #888)
  • multiBamSummary and multiBigwigSummary no longer exclude small bins at the end of genomic chunks. multiBamSummary now has a --genomicChunkSize option in case users need to control the size of the genome used for multiprocessing for consistency. (issue #887)
  • Added 4 new colormaps, which were copied from the seaborn project (issue #879). These are: rocket, mako, vlag, and icefire.
  • Fixed an issue in the Galaxy wrapper of plotCorrelation where the X and Y.
  • Fixed an issue with the --Offset option, where a single negative value wouldn't include only a single position, but rather that base through the end of the read. (stems from issue #902)
  • Clustered output from plotHeatmap and plotProfile now allow computing the silhouette score of each row. This is printed in the returned BED file as the last column.