From dd4fdfd4a7753ce13236eee6691a4b7f5ca97339 Mon Sep 17 00:00:00 2001
From: Tobias Rausch <rauschtobi@gmail.com>
Date: Mon, 4 Mar 2024 16:41:56 +0100
Subject: [PATCH] svlen insertions

---
 src/compvcf.h | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/src/compvcf.h b/src/compvcf.h
index dbcf8da..781c0b9 100644
--- a/src/compvcf.h
+++ b/src/compvcf.h
@@ -265,6 +265,10 @@ namespace sansa
       // Insertion length
       if (_isKeyPresent(hdr, "INSLEN")) {
 	if (bcf_get_info_int32(hdr, rec, "INSLEN", &inslen, &ninslen) > 0) inslenVal = *inslen;
+      } else if (svtVal  == "INS") {
+	if (_isKeyPresent(hdr, "SVLEN")) {
+	  if (bcf_get_info_int32(hdr, rec, "SVLEN", &inslen, &ninslen) > 0) inslenVal = *inslen;
+	}
       }
 
       // BNDs