diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/README.txt b/genie-userconfigs/MS/stockeyetal.PNAS.2021/README.txt new file mode 100644 index 000000000..d79772ded --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/README.txt @@ -0,0 +1,58 @@ +################################################################ +### readme.txt ################################################# +################################################################ + +For: 'Decreasing Phanerozoic extinction intensity as a consequence of Earth surface oxygenation and metazoan ecophysiology' + +Richard G. Stockey1*, Alexandre Pohl2,3, Andy Ridgwell2, Seth Finnegan4, and Erik A. Sperling1 + +1 Department of Geological Sciences, Stanford University, Stanford, CA 94305, USA +2 Department of Earth and Planetary Sciences, University of California, Riverside, CA, USA +3 Biogéosciences, UMR 6282, UBFC/CNRS, Université Bourgogne Franche-Comté, 6 boulevard Gabriel, F-21000 Dijon, France +4 Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA +* Corresponding author: rstockey@stanford.edu + +################################################################ +11/15/2020 -- README.txt file creation (R.G.S) +################################################################ + +Provided is the code used to create the model experiments presented in the paper. +Also given are the configuration files necessary to run these experiments. + +The intention is to provide an opportunity to question the assumptions and +interpretation through re-analysis and the creation of new and different experiments. +(Plus, to provide a means to replicate results.) + +All experiments are run from: $HOME/cgenie.muffin/genie-main +(unless a different installation directory has been used) + +All four O2-CO2 ensembles are described below using x-y placeholders for atmospheric O2 and CO2 +concentrations as a function of preindustrial atmospheric levels (PAL) + +For each ensemble, all possible combinations of x and y are used, resulting in 42 simulations per ensemble +O2 forcings (x) are the same across all ensembles +CO2 forcings (y) are described separately for each ensemble + +x --> 0.05, 0.1, 0.2, 0.4, 0.6, 0.8, 1 [for all ensembles described below] + +######## model ensembles ########################## + +# Ordovician continental configuration +y --> 4, 8, 16, 32, 64, 128 +./runmuffin.sh muffin.CB.fm0450dc.BASES MS/stockeyetal.PNAS.2021/fm0450.CO2.O2 muffin.CB.fm0450dc.BASES.yCO2.xO2.1EFD.config 10000 + +# Permian continental configuration +y --> 2, 4, 8, 16, 32, 64 +./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0251b.BASES MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp cgenie.eb_go_gs_ac_bg.p0251b.BASES.yCO2.xO2.1EFD.ramp.config 10000 + +# Paleocene continental configuration +y --> 0.5, 1, 2, 4, 8, 16 +./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0055c.BASES MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp cgenie.eb_go_gs_ac_bg.p0055c.BASES.yCO2.xO2.1EFD.ramp.config 20000 + +# Ordovician continental configuration - shallow remineralization depth +y --> 4, 8, 16, 32, 64, 128 +./runmuffin.sh muffin.CB.fm0450dc.BASES MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallowremin muffin.CB.fm0450dc.BASES.yCO2.xO2.0.34EFD.config 10000 + +################################################################ +################################################################ +################################################################ \ No newline at end of file diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..544709206 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..6cd1bfbe3 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..e6c906ec7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..be2b6387e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..9bf64eec8 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..91998e857 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..ccdc7193e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.128CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..70e9ef02b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..c417cc387 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..d0ab9dbe4 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..9fae12ca8 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..ae737d78e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..9f2b59874 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..893319b89 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.16CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..481440787 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..cd54d4f4c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..fbf00e104 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..6c503e0da --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..9a42f91f8 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..0a0eee5cc --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..3a53af5c2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.32CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..056e2cd8b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..0b0dc34b2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..f751f6382 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..15be5a4c2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..87e3e008d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..fcb5d8765 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..a2668247d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.4CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..5774863c4 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..a83a9f0c3 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..251617d97 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..268ab0a93 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..c89ed67d1 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..0a6f0ff4d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..2eabdd170 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.64CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=8.970E-02 +# DIC +bg_ocn_init_3=9.091E-02 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.0.34EFD.config new file mode 100644 index 000000000..0d6df1d40 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.0.34EFD.config new file mode 100644 index 000000000..6aea3f647 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.0.34EFD.config new file mode 100644 index 000000000..989a3c5d9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.0.34EFD.config new file mode 100644 index 000000000..001ccf0c9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.0.34EFD.config new file mode 100644 index 000000000..6e13bbae6 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.0.34EFD.config new file mode 100644 index 000000000..8f475f8a8 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.1O2.0.34EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.1O2.0.34EFD.config new file mode 100644 index 000000000..25984a495 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2.shallow.remin/muffin.CB.fm0450dc.BASES.8CO2.1O2.0.34EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=200 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..3489ec53f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..2f7382224 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..ab9237b9d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..81bbc6505 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..31b25a29e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..4d77dfb84 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.1O2.1EFD.config new file mode 100644 index 000000000..a0c0c365d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.128CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.035584 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..b3716a20b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..a9ebe46b5 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..a7ede1260 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..5f49748ae --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..b6baf916d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..45009364a --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.1O2.1EFD.config new file mode 100644 index 000000000..cda88c680 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.16CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..397b86def --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..c575a3793 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..11fb29694 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..948f4b592 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..16f6eb34e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..02cc8e58d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.1O2.1EFD.config new file mode 100644 index 000000000..3348a2620 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.32CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..3786e2688 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..b24edd16e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..33cbc2b77 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..0f05ced3f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..e37200bc7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..9d269a8fc --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.1O2.1EFD.config new file mode 100644 index 000000000..b0985076f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.4CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..35980a963 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..9383c185e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..1c5d7c711 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..7fb41fd31 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..17a0bb57f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..43f32d521 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.1O2.1EFD.config new file mode 100644 index 000000000..69269b93f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.64CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.1EFD.config new file mode 100644 index 000000000..441a8090d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.05O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.1EFD.config new file mode 100644 index 000000000..2e0ac351b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.1EFD.config new file mode 100644 index 000000000..decafc660 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.2O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.1EFD.config new file mode 100644 index 000000000..aa8223063 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.4O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.1EFD.config new file mode 100644 index 000000000..af4e2c2e2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.6O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.1EFD.config new file mode 100644 index 000000000..ea7231f5b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.0.8O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.1O2.1EFD.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.1O2.1EFD.config new file mode 100644 index 000000000..3cc59707c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/fm0450.CO2.O2/muffin.CB.fm0450dc.BASES.8CO2.1O2.1EFD.config @@ -0,0 +1,70 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=15 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..4f361c71a --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..a1ad73905 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..4c6523569 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..aaa44e02d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..fbed423a5 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..99f2bebd9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..0e69eeea6 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.0.5CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000139 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..707e59b23 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..9b1ea7263 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..2383c373c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..d111329b4 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..46b883136 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..455753c29 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..d899bc6af --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.16CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..31b47510c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..bc33450df --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..c7033ebde --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..02a86b9a0 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..6c2672522 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..31ff6f5a6 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..4057e0038 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.1CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000278 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..e3a6748ad --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..e2536b643 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..764be61bb --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..40802b916 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..6550ebcf1 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..9131252b7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..0e401f096 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.2CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..8da3a307a --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..87cf75fba --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..62268702e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..13d650ca0 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..c8b97dfa4 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..cf0c55c9c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..eef7dd9bd --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.4CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..0864e6087 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..1ffaa10ad --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..50e5b9b86 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..2a74513ed --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..40d99f3cb --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..eefce2f6c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..2258d2831 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0055.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0055c.BASES.8CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# SET CARBONATE PRODUCTION BASED ON MODERN MEYER +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..4687de442 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000.lowO2" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..ac0bc36c9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..95c92f6d7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..bded83b89 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..50f5c89c2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..f1e2b7693 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..5a3add1c7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.16CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.004448 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..a061f4128 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..56e5f8911 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..6a2a96236 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..a232553f3 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..577139062 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..35af4458e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..11c2bbb6f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.2CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.000556 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..9075e8860 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=99 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000.lowO2" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..bd1e58fb9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..d66c6ed56 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..d133376f0 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..9733d6ff2 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..3f9deb12c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..c1dd62d9b --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.32CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.008896 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..7cf7dd879 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..2b18ac27e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..57582eb23 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..f87e4ab90 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..73fee2ead --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..2d21d8f4c --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..ee183f172 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.4CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2" +bg_par_atm_force_scale_val_3=0.001112 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..b65706585 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000.lowO2" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..db3010bf4 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..f4c4e4c59 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..55670c08d --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..0b8709f3a --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..75fc03369 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..8eae46efd --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.64CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.017792 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.05O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.05O2.1EFD.ramp.config new file mode 100644 index 000000000..b5dbf1af7 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.05O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.010475 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.1O2.1EFD.ramp.config new file mode 100644 index 000000000..8bc6b4a2f --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.02095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.2O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.2O2.1EFD.ramp.config new file mode 100644 index 000000000..3c0045cf1 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.2O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0419 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.4O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.4O2.1EFD.ramp.config new file mode 100644 index 000000000..40813773e --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.4O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.0838 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.6O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.6O2.1EFD.ramp.config new file mode 100644 index 000000000..f762c5dd6 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.6O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1257 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.8O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.8O2.1EFD.ramp.config new file mode 100644 index 000000000..e1c433057 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.0.8O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.1676 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +# diff --git a/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.1O2.1EFD.ramp.config b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.1O2.1EFD.ramp.config new file mode 100644 index 000000000..0e3aaf3d9 --- /dev/null +++ b/genie-userconfigs/MS/stockeyetal.PNAS.2021/p0251.CO2.O2.ramp/cgenie.eb_go_gs_ac_bg.p0251b.BASES.8CO2.1O2.1EFD.ramp.config @@ -0,0 +1,71 @@ +# +# --- CLIMATE -------------------------------------------------- +# +# set climate feedback +ea_36=y +# +# --- BIOLOGICAL NEW PRODUCTION -------------------------------- +# +# biological scheme ID string +bg_par_bio_prodopt="bio_P" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- +# +#production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# --- INORGANIC MATTER EXPORT RATIOS --------------------------- +# +# SET NO PELAGIC CARBONATE PRODUCTION +bg_par_bio_red_POC_CaCO3=0.0 +bg_par_bio_red_POC_CaCO3_pP=0.0 +# +# --- REMINERALIZATION ----------------------------------------- +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# NO fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +#remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +#initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +#remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# --- DATA SAVING ---------------------------------------------- +# +bg_par_data_save_level=4 +bg_ctrl_debug_lvl0=.true. +ma_debug_loop=1 +# +# --- FORCINGS ------------------------------------------------- +# +# specify forcings +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.RpO2.ramp.1000" +bg_par_atm_force_scale_val_3=0.002224 # restoring forcing for pCO2 [atm] +bg_par_atm_force_scale_val_4=-6.5 +bg_par_atm_force_scale_val_6=0.2095 # restoring forcing for pO2 [atm] +# +# --- INITIAL CONDITIONS --------------------------------------- +# +# Ca +bg_ocn_init_35=2.251E-02 +# Mg +bg_ocn_init_50=2.392E-02 +# ALK +bg_ocn_init_12=3.009E-03 +# DIC +bg_ocn_init_3=3.036E-03 +# +# --- END ------------------------------------------------------ +# +#