From 4eda86baa1a94af10e0e999c1dddb65d5b856c5b Mon Sep 17 00:00:00 2001 From: Andy Ridgwell Date: Fri, 16 Jun 2023 14:31:46 -0700 Subject: [PATCH] - --- .../Barrettetal.Eocene.p0055c.3x.SPIN1.3x | 117 --------------- ...rrettetal.Eocene.p0055c.8P7Z3F.3x.SPIN2.3x | 117 --------------- .../Barrettetal.Modern.worjh2.1x.SPIN1.1x | 114 -------------- ...rrettetal.Modern.worjh2.8P7Z3F.1x.SPIN2.1x | 114 -------------- .../Barrettetal.Modern.worlg4.1x.Fe.SPIN1.Fe | 96 ------------ ...ttetal.Modern.worlg4.8P7Z3F.1x.Fe.SPIN2.Fe | 140 ------------------ ...tetal.PETM.p0055c.8P7Z3F.EXPERIMENT.8P7Z3F | 118 --------------- ...8P7Z3F_PETM1SST.EXPERIMENT.8P7Z3F_PETM1SST | 122 --------------- 8 files changed, 938 deletions(-) delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.3x.SPIN1.3x delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.8P7Z3F.3x.SPIN2.3x delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.1x.SPIN1.1x delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.8P7Z3F.1x.SPIN2.1x delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.1x.Fe.SPIN1.Fe delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.8P7Z3F.1x.Fe.SPIN2.Fe delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F.EXPERIMENT.8P7Z3F delete mode 100644 genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F_PETM1SST.EXPERIMENT.8P7Z3F_PETM1SST diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.3x.SPIN1.3x b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.3x.SPIN1.3x deleted file mode 100644 index f213b4a0e..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.3x.SPIN1.3x +++ /dev/null @@ -1,117 +0,0 @@ -# -# -# --- CLIMATE -------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -# bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- -# -#production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS --------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.200 -#exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.0 -# -# --- REMINERALIZATION ----------------------------------------- -# -#DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -#initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -#remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -#initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -#remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# - -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z1F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z1F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. - -# -# --- DATA SAVING ---------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" -bg_par_atm_force_scale_val_3=834.0E-06 -bg_par_atm_force_scale_val_4=-4.9 -bg_par_windspeed_file="p0055c_windspeed.dat" -#re-scale gas transfer coeff to give ~0.058 mol m-2 yr-1 uatm-1 global mean air-sea coefficient (original: 0.310) -bg_par_gastransfer_a=0.5196 -# -# --- MISC ----------------------------------------------------- -# -# Set initial ocean alkalinity -bg_ocn_init_12=1.975E-03 -# -bg_par_atm_force_scale_val_3=834.0E-06 -go_imld=1 # JDW -# --- END ------------------------------------------------------ -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.8P7Z3F.3x.SPIN2.3x b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.8P7Z3F.3x.SPIN2.3x deleted file mode 100644 index 736b97e1b..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Eocene.p0055c.8P7Z3F.3x.SPIN2.3x +++ /dev/null @@ -1,117 +0,0 @@ -# -# -# --- CLIMATE -------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- -# -#production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS --------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.200 -#exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.0 -# -# --- REMINERALIZATION ----------------------------------------- -# -#DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -#initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -#remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -#initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -#remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# - -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z3F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z3F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. - -# -# --- DATA SAVING ---------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" -bg_par_atm_force_scale_val_3=834.0E-06 -bg_par_atm_force_scale_val_4=-4.9 -bg_par_windspeed_file="p0055c_windspeed.dat" -#re-scale gas transfer coeff to give ~0.058 mol m-2 yr-1 uatm-1 global mean air-sea coefficient (original: 0.310) -bg_par_gastransfer_a=0.5196 -# -# --- MISC ----------------------------------------------------- -# -# Set initial ocean alkalinity -bg_ocn_init_12=1.975E-03 -# -bg_par_atm_force_scale_val_3=834.0E-06 -go_imld=1 # JDW -# --- END ------------------------------------------------------ -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.1x.SPIN1.1x b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.1x.SPIN1.1x deleted file mode 100644 index d06ed455f..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.1x.SPIN1.1x +++ /dev/null @@ -1,114 +0,0 @@ -# -# -# --- CLIMATE --------------------------------------------------------- -# -# set no climate feedback -ea_36=n -# -# --- BIOLOGICAL NEW PRODUCTION --------------------------------------- -# -# biological scheme ID string -# bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ------------------------------------ -# -# production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS ---------------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.0485 -# exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.7440 -# -# --- REMINERALIZATION ------------------------------------------------ -# -# DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -# initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -# remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -# initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -# remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# -# --- IRON ---------------------------------------------------------- -# -# -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z1F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z1F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. -go_imld = 1 # JDW - -# -# --- DATA SAVING ----------------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS -------------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_atm_force_scale_val_4=-6.5 -# -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_data_save_level=8 -ea_36=y -# --- END ------------------------------------------------------------- -# -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.8P7Z3F.1x.SPIN2.1x b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.8P7Z3F.1x.SPIN2.1x deleted file mode 100644 index a745be8ef..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worjh2.8P7Z3F.1x.SPIN2.1x +++ /dev/null @@ -1,114 +0,0 @@ -# -# -# --- CLIMATE --------------------------------------------------------- -# -# set no climate feedback -ea_36=n -# -# --- BIOLOGICAL NEW PRODUCTION --------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ------------------------------------ -# -# production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS ---------------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.0485 -# exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.7440 -# -# --- REMINERALIZATION ------------------------------------------------ -# -# DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -# initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -# remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -# initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -# remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# -# --- IRON ---------------------------------------------------------- -# -# -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z3F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z3F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. -go_imld = 1 # JDW - -# -# --- DATA SAVING ----------------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS -------------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_atm_force_scale_val_4=-6.5 -# -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_data_save_level=8 -ea_36=y -# --- END ------------------------------------------------------------- -# -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.1x.Fe.SPIN1.Fe b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.1x.Fe.SPIN1.Fe deleted file mode 100644 index ac04f2f9b..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.1x.Fe.SPIN1.Fe +++ /dev/null @@ -1,96 +0,0 @@ -# -# -# --- CLIMATE ------------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="bio_PFe" -# [PO4] M-M half-sat value (mol kg-1) -bg_par_bio_c0_PO4=0.10E-06 -# [Fe] M-M half-sat value (mol kg-1) -bg_par_bio_c0_Fe=0.10E-09 -# biological uptake time-scale -bg_par_bio_tau=95.6337 -# -# --- ORGANIC MATTER EXPORT RATIOS ---------------------------------- -# -# production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS -------------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.0485 -# exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.7440 -# -# --- REMINERALIZATION ---------------------------------------------- -# -# DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=1.0 -# initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.055 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -# remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -# initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -# remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# -# --- IRON ---------------------------------------------------------- -# -bg_opt_geochem_Fe='hybrid' -# aeolian Fe solubility -bg_par_det_Fe_sol=0.002014275 -#exponent for aeolian Fe solubility [use 1.0 for uniform solubility] -bg_par_det_Fe_sol_exp=0.500 -# modifier of the scavenging rate of dissolved Fe -bg_par_scav_Fe_sf_POC=0.344104 -bg_par_scav_Fe_sf_CaCO3=0.000 -bg_par_scav_Fe_sf_opal=0.000 -bg_par_scav_Fe_sf_det=0.000 -# no scavenged regeneration -bg_par_scav_fremin=0.0 -# return POFe -bg_ctrl_bio_NO_fsedFe=.false. -# Variable Fe:C -bg_ctrl_bio_red_fixedFetoC=.false. -# adjust pK'(FeL) -bg_par_K_FeL_pP=11.0 -#(max) C/Fe organic matter ratio -bg_par_bio_red_POFe_POC=250000.0 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- power -bg_par_bio_FetoC_pP=-0.4225 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- scaling -bg_par_bio_FetoC_K=103684.0 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- constant -bg_par_bio_FetoC_C=0.0 -# -# --- DATA SAVING ----------------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------------ -# -# specify forcings -bg_par_forcing_name="worlg4.RpCO2_Rp13CO2.FeMahowald2006" -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_atm_force_scale_val_4=-6.5 -# -# --- MISC ---------------------------------------------------------- -# -# kraus-turner mixed layer scheme on (1) or off (0) -go_imld = 1 -# -# --- END ----------------------------------------------------------- -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.8P7Z3F.1x.Fe.SPIN2.Fe b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.8P7Z3F.1x.Fe.SPIN2.Fe deleted file mode 100644 index 573194287..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.Modern.worlg4.8P7Z3F.1x.Fe.SPIN2.Fe +++ /dev/null @@ -1,140 +0,0 @@ -# -# -# --- CLIMATE ------------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ---------------------------------- -# -# production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS -------------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.0485 -# exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.7440 -# -# --- REMINERALIZATION ---------------------------------------------- -# -# DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=1.0 -# initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.055 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -# remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -# initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -# remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# -# --- IRON ---------------------------------------------------------- -# -bg_opt_geochem_Fe='hybrid' -# aeolian Fe solubility -bg_par_det_Fe_sol=0.002014275 -#exponent for aeolian Fe solubility [use 1.0 for uniform solubility] -bg_par_det_Fe_sol_exp=0.500 -# modifier of the scavenging rate of dissolved Fe -bg_par_scav_Fe_sf_POC=0.344104 -bg_par_scav_Fe_sf_CaCO3=0.000 -bg_par_scav_Fe_sf_opal=0.000 -bg_par_scav_Fe_sf_det=0.000 -# no scavenged regeneration -bg_par_scav_fremin=0.0 -# return POFe -bg_ctrl_bio_NO_fsedFe=.false. -# Variable Fe:C -bg_ctrl_bio_red_fixedFetoC=.false. -# adjust pK'(FeL) -bg_par_K_FeL_pP=11.0 -#(max) C/Fe organic matter ratio -bg_par_bio_red_POFe_POC=250000.0 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- power -bg_par_bio_FetoC_pP=-0.4225 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- scaling -bg_par_bio_FetoC_K=103684.0 -#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- constant -bg_par_bio_FetoC_C=0.0 -# -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z3F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z3F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.true. -eg_fquota =.true. -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. - -# -# --- DATA SAVING ----------------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------------ -# -# specify forcings -bg_par_forcing_name="worlg4.RpCO2_Rp13CO2.FeMahowald2006" -bg_par_atm_force_scale_val_3=278.0E-06 -bg_par_atm_force_scale_val_4=-6.5 -# -# --- MISC ---------------------------------------------------------- -# -# kraus-turner mixed layer scheme on (1) or off (0) -go_imld = 1 -# -# --- END ----------------------------------------------------------- -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F.EXPERIMENT.8P7Z3F b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F.EXPERIMENT.8P7Z3F deleted file mode 100644 index 309cd713f..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F.EXPERIMENT.8P7Z3F +++ /dev/null @@ -1,118 +0,0 @@ -# -# -# --- CLIMATE -------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- -# -#production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS --------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.200 -#exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.0 -# -# --- REMINERALIZATION ----------------------------------------- -# -#DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -#initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -#remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -#initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -#remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# - -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z3F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z3F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. - -# -# --- DATA SAVING ---------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.Gutjahretal2016_R07_d13CpHbor_Corg" # REB (Gutjahr forcing for transient) -bg_par_misc_t_start=40000.0 # REB -bg_par_atm_force_scale_val_3=1.0 # REB -bg_par_atm_force_scale_val_4=1.0 # REB -bg_par_infile_slice_name='save_timeslice.Barrettetal.PETM.dat' #REB -bg_par_windspeed_file="p0055c_windspeed.dat" -#re-scale gas transfer coeff to give ~0.058 mol m-2 yr-1 uatm-1 global mean air-sea coefficient (original: 0.310) -bg_par_gastransfer_a=0.5196 -# -# --- MISC ----------------------------------------------------- -# -# Set initial ocean alkalinity -bg_ocn_init_12=1.975E-03 -# -go_imld=1 # JDW -# --- END ------------------------------------------------------ -# diff --git a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F_PETM1SST.EXPERIMENT.8P7Z3F_PETM1SST b/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F_PETM1SST.EXPERIMENT.8P7Z3F_PETM1SST deleted file mode 100644 index 0efa22a27..000000000 --- a/genie-userconfigs/PUBS/published/Barrett_et_al.2023/Barrettetal.PETM.p0055c.8P7Z3F_PETM1SST.EXPERIMENT.8P7Z3F_PETM1SST +++ /dev/null @@ -1,122 +0,0 @@ -# -# -# --- CLIMATE -------------------------------------------------- -# -# set climate feedback -ea_36=y -# -# --- BIOLOGICAL NEW PRODUCTION ------------------------------------- -# -# biological scheme ID string -bg_par_bio_prodopt="NONE" -# -# --- ORGANIC MATTER EXPORT RATIOS ----------------------------- -# -#production fraction of dissolved organic matter -bg_par_bio_red_DOMfrac=0.66 -# -# --- INORGANIC MATTER EXPORT RATIOS --------------------------- -# -# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -bg_par_bio_red_POC_CaCO3=0.200 -#exponent for modifier of CaCO3:POC export ratio -bg_par_bio_red_POC_CaCO3_pP=0.0 -# -# --- REMINERALIZATION ----------------------------------------- -# -#DOC lifetime (yrs) -bg_par_bio_remin_DOMlifetime=0.5 -#initial fractional abundance of POC component #2 -bg_par_bio_remin_POC_frac2=0.0557 -# depth of remineralization or particulate organic matter -bg_par_bio_remin_POC_eL1=589.9451 -#remineralization length #2 for POC -bg_par_bio_remin_POC_eL2=1000000.0 -#initial fractional abundance of CaCO3 component #2 -bg_par_bio_remin_CaCO3_frac2=0.45 -# depth of remineralization or CaCO3 -bg_par_bio_remin_CaCO3_eL1=1.8905e+003 -#remineralization length #2 for CaCO3 -bg_par_bio_remin_CaCO3_eL2=1000000.0 -# - -# --- ECOGEM ---------------------------------------------------------- -# -gm_ctrl_debug_init =0 -eg_ctrl_debug_eco_init =.false. - -eg_par_ecogem_plankton_file ='8P7Z3F.eco' -eg_ctrl_grazing_explicit=.true. -eg_par_ecogem_grazing_file='8P7Z3F.zoo' - -#################### Nitrogen ############################ -eg_useNO3 =.false. -eg_nquota =.false. -################## Phosphorus ############################ -eg_usePO4 =.true. -eg_pquota =.true. -######################## Iron ############################ -eg_useFe =.false. # JDW -eg_fquota =.false. # JDW -################# Chlorophyll ############################ -eg_chlquota =.true. -################# d13C ################################### -eg_useDIC_13C =.true. - -# Tuned -eg_qminP_a = 3.33e-3 -eg_qminFe_a = 1.00e-6 -eg_qmaxFe_a = 4.00e-6 - -eg_ns = 2 - -eg_respir_a = 0 - -eg_beta_mort_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_mort_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_mort_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) -eg_beta_graz_a = 0.8 # Maximum fraction to DOM as ESD --> zero -eg_beta_graz_b = 0.4 # Minimum fraction to DOM as ESD --> infinity -eg_beta_graz_c = 100.0 # Size at 50:50 partition (default = 100 µm^3) - -eg_par_bio_red_POC_CaCO3 = 0.0285 # underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) -eg_par_bio_red_POC_CaCO3_pP = 0.7440 # exponent for modifier of CaCO3:POC export ratio - -eg_nsubtime =25 -eg_n_keco =1 - -# disable ECOGEM restarts (as not currently coded up / used) -eg_ctrl_ncrst =.false. -eg_ctrl_continuing =.false. - -# -# --- DATA SAVING ---------------------------------------------- -# -bg_par_data_save_level=8 -bg_ctrl_debug_lvl0=.true. -ma_debug_loop=1 -# -# --- FORCINGS ------------------------------------------------- -# -# specify forcings -bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2.Gutjahretal2016_R07_d13CpHbor_Corg" # REB (Gutjahr forcing for transient) -bg_par_misc_t_start=40000.0 # REB -bg_par_atm_force_scale_val_3=1.0 # REB -bg_par_atm_force_scale_val_4=1.0 # REB -bg_par_infile_slice_name='save_timeslice.Barrettetal.PETM.dat' #REB -bg_par_windspeed_file="p0055c_windspeed.dat" -#re-scale gas transfer coeff to give ~0.058 mol m-2 yr-1 uatm-1 global mean air-sea coefficient (original: 0.310) -bg_par_gastransfer_a=0.5196 -# -# --- MISC ----------------------------------------------------- -# -# Set initial ocean alkalinity -bg_ocn_init_12=1.975E-03 -# -go_imld=1 # JDW - -eg_ctrl_force_T=.true. -eg_par_ecogem_force_T_file="Barrett2022_PETM1SST.dat" - -# --- END ------------------------------------------------------ -#