From 58c922eaeb4d5fa05be007c22df97e39de97f54f Mon Sep 17 00:00:00 2001 From: Andy Ridgwell Date: Mon, 30 Oct 2023 13:14:06 -0700 Subject: [PATCH] Add files via upload --- genie-userconfigs/LABS/ch06.CO2emissions.EXPT | 34 +++++++ genie-userconfigs/LABS/ch06.historical.EXPT | 37 ++++++++ genie-userconfigs/LABS/ch07.1.16lvl.EXPT | 64 +++++++++++++ genie-userconfigs/LABS/ch07.1.8lvl.EXPT | 64 +++++++++++++ genie-userconfigs/LABS/ch07.3.STD.EXPT | 68 +++++++++++++ genie-userconfigs/LABS/ch07.3.TDEP.EXPT | 76 +++++++++++++++ genie-userconfigs/LABS/ch07.4.Fe.EXPT | 95 +++++++++++++++++++ 7 files changed, 438 insertions(+) create mode 100644 genie-userconfigs/LABS/ch06.CO2emissions.EXPT create mode 100644 genie-userconfigs/LABS/ch06.historical.EXPT create mode 100644 genie-userconfigs/LABS/ch07.1.16lvl.EXPT create mode 100644 genie-userconfigs/LABS/ch07.1.8lvl.EXPT create mode 100644 genie-userconfigs/LABS/ch07.3.STD.EXPT create mode 100644 genie-userconfigs/LABS/ch07.3.TDEP.EXPT create mode 100644 genie-userconfigs/LABS/ch07.4.Fe.EXPT diff --git a/genie-userconfigs/LABS/ch06.CO2emissions.EXPT b/genie-userconfigs/LABS/ch06.CO2emissions.EXPT new file mode 100644 index 000000000..009b29755 --- /dev/null +++ b/genie-userconfigs/LABS/ch06.CO2emissions.EXPT @@ -0,0 +1,34 @@ +# ******************************************************************* +# *** ch06.CO2emissions ********************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# set climate feedback (climate responding to changing pCO2) +ea_36=y +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# Set no biological production +bg_par_bio_prodopt='NONE' +# +# *** DATA SAVING *************************************************** +# +# OCEAN ACIDIFICATION & FOSSIL FUEL GAMES +bg_par_data_save_level=10 +# +# *** FORCINGS ****************************************************** +# +# specify forcings -- flux of CO2 to atmosphere +bg_par_forcing_name="pyyyyz.FpCO2_Fp13CO2" +bg_par_atm_force_scale_val_3=8.3333e+013 +bg_par_atm_force_scale_val_4=-27.0 +# +# *** MISC ********************************************************** +# +# activate single-tracer ventillation age tracer +bg_ctrl_force_ocn_age1=.true. +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* diff --git a/genie-userconfigs/LABS/ch06.historical.EXPT b/genie-userconfigs/LABS/ch06.historical.EXPT new file mode 100644 index 000000000..ceefb4910 --- /dev/null +++ b/genie-userconfigs/LABS/ch06.historical.EXPT @@ -0,0 +1,37 @@ +# ******************************************************************* +# *** ch06.historical *********************************************** +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# set climate feedback (climate responding to changing pCO2) +ea_36=y +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# Set no biological production +bg_par_bio_prodopt='NONE' +# +# *** DATA SAVING *************************************************** +# +# OCEAN ACIDIFICATION & FOSSIL FUEL GAMES +bg_par_data_save_level=10 +# save frequency +bg_par_infile_slice_name='save_timeslice_historicalfuture.dat' +bg_par_infile_sig_name='save_timeseries_historicalfuture.dat' +# +# *** FORCINGS ****************************************************** +# +# specify forcings -- historical forcing of pCO2 +bg_par_forcing_name='worjh2.historical2010' +# +# *** MISC ********************************************************** +# +# activate single-tracer ventillation age tracer +bg_ctrl_force_ocn_age1=.true. +# change start year +bg_par_misc_t_start=1765.0 +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* diff --git a/genie-userconfigs/LABS/ch07.1.16lvl.EXPT b/genie-userconfigs/LABS/ch07.1.16lvl.EXPT new file mode 100644 index 000000000..1c997a1d1 --- /dev/null +++ b/genie-userconfigs/LABS/ch07.1.16lvl.EXPT @@ -0,0 +1,64 @@ +# ******************************************************************* +# *** EXAMPLE ******************************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# turn off climate feedback (climate not responding to changing pCO2) +ea_36=n +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# biological scheme ID string +bg_par_bio_prodopt='1N1T_PO4MM' +# maximum rate of conversion of dissolved PO4 into organic matter by phytoplankton (mol kg-1 yr-1) +bg_par_bio_k0_PO4=8.9876e-006 +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=8.9369e-007 +# +# *** ORGANIC MATTER EXPORT RATIOS ********************************** +# +# production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# *** INORGANIC MATTER EXPORT RATIOS ******************************** +# +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# *** REMINERALIZATION ********************************************** +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# initial fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0557 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +# remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +# initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +# remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# *** DATA SAVING *************************************************** +# +# Preformed diagnostics option == BASIC + biology + tracer + proxy +bg_par_data_save_level=7 +# force time-slice save at run end only +bg_par_infile_slice_name='save_timeslice_NONE.dat' +# +# *** FORCINGS ****************************************************** +# +# +# *** MISC ********************************************************** +# +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* +# \ No newline at end of file diff --git a/genie-userconfigs/LABS/ch07.1.8lvl.EXPT b/genie-userconfigs/LABS/ch07.1.8lvl.EXPT new file mode 100644 index 000000000..b895b3de2 --- /dev/null +++ b/genie-userconfigs/LABS/ch07.1.8lvl.EXPT @@ -0,0 +1,64 @@ +# ******************************************************************* +# *** EXAMPLE ******************************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# turn off climate feedback (climate not responding to changing pCO2) +ea_36=n +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# biological scheme ID string +bg_par_bio_prodopt='1N1T_PO4MM' +# maximum rate of conversion of dissolved PO4 into organic matter by phytoplankton (mol kg-1 yr-1) +bg_par_bio_k0_PO4=1.9582242E-06 +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=2.1989611E-07 +# +# *** ORGANIC MATTER EXPORT RATIOS ********************************** +# +# production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# *** INORGANIC MATTER EXPORT RATIOS ******************************** +# +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.044372 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.8053406 +# +# *** REMINERALIZATION ********************************************** +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# initial fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=6.4591110E-02 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=550.5195 +# remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +# initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.4325 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1083.486 +# remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# *** DATA SAVING *************************************************** +# +# Preformed diagnostics option == BASIC + biology + tracer + proxy +bg_par_data_save_level=7 +# force time-slice save at run end only +bg_par_infile_slice_name='save_timeslice_NONE.dat' +# +# *** FORCINGS ****************************************************** +# +# +# *** MISC ********************************************************** +# +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* +# \ No newline at end of file diff --git a/genie-userconfigs/LABS/ch07.3.STD.EXPT b/genie-userconfigs/LABS/ch07.3.STD.EXPT new file mode 100644 index 000000000..1d84aadca --- /dev/null +++ b/genie-userconfigs/LABS/ch07.3.STD.EXPT @@ -0,0 +1,68 @@ +# ******************************************************************* +# *** EXAMPLE ******************************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# set climate feedback (climate responding to changing pCO2) +ea_36=y +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# biological scheme ID string +bg_par_bio_prodopt='1N1T_PO4MM' +# maximum rate of conversion of dissolved PO4 into organic matter by phytoplankton (mol kg-1 yr-1) +bg_par_bio_k0_PO4=8.9876e-006 +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=8.9369e-007 +# +# *** ORGANIC MATTER EXPORT RATIOS ********************************** +# +# production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# *** INORGANIC MATTER EXPORT RATIOS ******************************** +# +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# *** REMINERALIZATION ********************************************** +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# initial fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0557 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +# remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +# initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +# remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# *** DATA SAVING *************************************************** +# +# Preformed diagnostics option == BASIC + biology + tracer + proxy +bg_par_data_save_level=7 +# force time-slice save at run end only +bg_par_infile_slice_name='save_timeslice_NONE.dat' +# +# *** FORCINGS ****************************************************** +# +# specify forcings -- generic forcing of atmopsheric pCO2 and d13C +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" +bg_par_atm_force_scale_val_3=280.0E-06 +bg_par_atm_force_scale_val_4=-6.5 +# +# *** MISC ********************************************************** +# +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* +# \ No newline at end of file diff --git a/genie-userconfigs/LABS/ch07.3.TDEP.EXPT b/genie-userconfigs/LABS/ch07.3.TDEP.EXPT new file mode 100644 index 000000000..2e396a3e8 --- /dev/null +++ b/genie-userconfigs/LABS/ch07.3.TDEP.EXPT @@ -0,0 +1,76 @@ +# ******************************************************************* +# *** EXAMPLE ******************************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# set climate feedback (climate responding to changing pCO2) +ea_36=y +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# biological scheme ID string +bg_par_bio_prodopt='1N1T_PO4MM_Tdep' +# dissolved PO4 uptake timescale multiplier +bg_par_bio_mu1=10 +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=8.9369e-007 +# +# *** ORGANIC MATTER EXPORT RATIOS ********************************** +# +# production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# *** INORGANIC MATTER EXPORT RATIOS ******************************** +# +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# *** REMINERALIZATION ********************************************** +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=0.5 +# initial fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0557 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +# remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +# initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +# remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# T-dep remin parameters +bg_ctrl_bio_remin_POC_fixed=.false. +bg_par_bio_remin_sinkingrate=125.0 +bg_par_bio_remin_POC_K1=9.0E11 +bg_par_bio_remin_POC_Ea1=54000.0 +bg_par_bio_remin_POC_K2=1.0E14 +bg_par_bio_remin_POC_Ea2=80000.0 +bg_par_bio_remin_POC_frac2=0.008 +# +# *** DATA SAVING *************************************************** +# +# Preformed diagnostics option == BASIC + biology + tracer + proxy +bg_par_data_save_level=7 +# force time-slice save at run end only +bg_par_infile_slice_name='save_timeslice_NONE.dat' +# +# *** FORCINGS ****************************************************** +# +# specify forcings -- generic forcing of atmopsheric pCO2 and d13C +bg_par_forcing_name="pyyyyz.RpCO2_Rp13CO2" +bg_par_atm_force_scale_val_3=280.0E-06 +bg_par_atm_force_scale_val_4=-6.5 +# +# *** MISC ********************************************************** +# +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* +# diff --git a/genie-userconfigs/LABS/ch07.4.Fe.EXPT b/genie-userconfigs/LABS/ch07.4.Fe.EXPT new file mode 100644 index 000000000..57cad6e2e --- /dev/null +++ b/genie-userconfigs/LABS/ch07.4.Fe.EXPT @@ -0,0 +1,95 @@ +# ******************************************************************* +# *** EXAMPLE ******************************************************* +# ******************************************************************* +# +# *** CLIMATE ******************************************************* +# +# set climate feedback (climate responding to changing pCO2) +ea_36=y +# +# *** BIOLOGICAL NEW PRODUCTION ************************************* +# +# biological scheme ID string +bg_par_bio_prodopt="bio_PFe" +# [PO4] M-M half-sat value (mol kg-1) +bg_par_bio_c0_PO4=0.10E-06 +# [Fe] M-M half-sat value (mol kg-1) +bg_par_bio_c0_Fe=0.10E-09 +# biological uptake time-scale +bg_par_bio_tau=63.3827 +# +# *** ORGANIC MATTER EXPORT RATIOS ********************************** +# +# production fraction of dissolved organic matter +bg_par_bio_red_DOMfrac=0.66 +# +# *** INORGANIC MATTER EXPORT RATIOS ******************************** +# +# underlying export CaCO3 as a proportion of particulate organic matter (i.e., CaCO3/POC) +bg_par_bio_red_POC_CaCO3=0.0485 +# exponent for modifier of CaCO3:POC export ratio +bg_par_bio_red_POC_CaCO3_pP=0.7440 +# +# *** REMINERALIZATION ********************************************** +# +# DOC lifetime (yrs) +bg_par_bio_remin_DOMlifetime=1.0 +# initial fractional abundance of POC component #2 +bg_par_bio_remin_POC_frac2=0.0557 +# depth of remineralization or particulate organic matter +bg_par_bio_remin_POC_eL1=589.9451 +# remineralization length #2 for POC +bg_par_bio_remin_POC_eL2=1000000.0 +# initial fractional abundance of CaCO3 component #2 +bg_par_bio_remin_CaCO3_frac2=0.45 +# depth of remineralization or CaCO3 +bg_par_bio_remin_CaCO3_eL1=1.8905e+003 +# remineralization length #2 for CaCO3 +bg_par_bio_remin_CaCO3_eL2=1000000.0 +# +# *** IRON CYCLING ************************************************** +# +# iron tracer scheme +bg_opt_geochem_Fe='OLD' +# aeolian Fe solubility +bg_par_det_Fe_sol=0.00291468 +# modifier of the scavenging rate of dissolved Fe +bg_par_scav_Fe_sf_POC=1.338130 +# exponent for aeolian Fe solubility [use 1.0 for uniform solubility] +bg_par_det_Fe_sol_exp=0.500 +# no scavenged regeneration +bg_par_scav_fremin=0.0 +# return POFe +bg_ctrl_bio_NO_fsedFe=.false. +# Variable Fe:C +bg_ctrl_bio_red_fixedFetoC=.false. +# adjust pK'(FeL) +bg_par_K_FeL_pP=11.0 +#(max) C/Fe organic matter ratio +bg_par_bio_red_POFe_POC=250000.0 +#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- power +bg_par_bio_FetoC_pP=-0.4225 +#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- scaling +bg_par_bio_FetoC_K=103684.0 +#[FeT] dependent Fe:C ratio [Ridgwell, 2001] -- constant +bg_par_bio_FetoC_C=0.0 +# +# *** DATA SAVING *************************************************** +# +# Preformed diagnostics option == BASIC + biology + tracer + proxy +bg_par_data_save_level=11 +# force time-slice save at run end only +bg_par_infile_slice_name='save_timeslice_NONE.dat' +# +# *** FORCINGS ****************************************************** +# +# specify forcings -- dust field forcing (only) +bg_par_forcing_name="worjh2.FeMahowald2006" +# +# *** MISC ********************************************************** +# +# +# ******************************************************************* +# *** END *********************************************************** +# ******************************************************************* +# \ No newline at end of file