diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 24ca63e..95dee1c 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -11,6 +11,7 @@ "extensions": [ "github.vscode-pull-request-github", "mhutchie.git-graph", + "ms-python.black-formatter", "ms-python.python", "streetsidesoftware.code-spell-checker", "tamasfe.even-better-toml" @@ -18,12 +19,12 @@ "settings": { "files.insertFinalNewline": true, "files.trimTrailingWhitespace": true, - "python.formatting.provider": "black", - "python.languageServer": "Pylance", "[python]": { + "editor.defaultFormatter": "ms-python.black-formatter", "editor.formatOnSave": true, "editor.insertSpaces": true, - "editor.tabSize": 4 + "editor.tabSize": 4, + "python.languageServer": "Pylance" } } } diff --git a/decode/convert.py b/decode/convert.py index 7cb936a..5399289 100644 --- a/decode/convert.py +++ b/decode/convert.py @@ -1,4 +1,4 @@ -__all__ = ["frame", "units"] +__all__ = ["coord_units", "frame", "units"] # standard library @@ -15,6 +15,30 @@ UnitLike = Union[Unit, str] +def coord_units( + da: xr.DataArray, + coord_name: str, + new_units: UnitLike, + /, + *, + equivalencies: Optional[Equivalency] = None, +) -> xr.DataArray: + """Convert units of a coordinate of a DataArray. + + Args: + da: Input DataArray. + coord_name: Name of the coordinate to be converted. + new_units: Units to be converted from the current ones. + equivalencies: Optional Astropy equivalencies. + + Returns: + DataArray with the units of the coordinate converted. + + """ + new_coord = units(da[coord_name], new_units, equivalencies=equivalencies) + return da.assign_coords({coord_name: new_coord}) + + def frame( dems: xr.DataArray, new_frame: str, @@ -57,40 +81,29 @@ def frame( lon_origin[:] = 0.0 lat_origin[:] = 0.0 - return dems + return dems.assign_coords(frame=dems.frame.copy(False, new_frame)) def units( - dems: xr.DataArray, - coord_name: str, + da: xr.DataArray, new_units: UnitLike, /, *, equivalencies: Optional[Equivalency] = None, - inplace: bool = False, ) -> xr.DataArray: - """Convert units of a coordinate of DEMS. + """Convert units of a DataArray. Args: - dems: Target DEMS DataArray. - coord_name: Name of the coordinate for the conversion. + da: Input DataArray. new_units: Units to be converted from the current ones. equivalencies: Optional Astropy equivalencies. - inplace: Whether the units are converted in-place. Returns: - DEMS DataArray with the coordinate units converted. + DataArray with the units converted. """ - if not inplace: - # deepcopy except for data - dems = dems.copy(data=dems.data) - - coord = dems[coord_name] - - if (units := coord.attrs.get("units")) is None: - return dems + if (units := da.attrs.get("units")) is None: + raise ValueError("Units must exist in DataArray attrs.") - coord.values = Quantity(coord, units).to(new_units, equivalencies) - coord.attrs["units"] = new_units - return dems + new_data = Quantity(da, units).to(new_units, equivalencies) + return da.copy(False, new_data).assign_attrs(units=str(new_units)) diff --git a/decode/make.py b/decode/make.py index ce02f94..1cdee06 100644 --- a/decode/make.py +++ b/decode/make.py @@ -2,90 +2,20 @@ # standard library -from dataclasses import dataclass -from typing import Any, Literal, Tuple, Union +from typing import Union # dependencies import numpy as np import xarray as xr from astropy.units import Quantity, Unit -from xarray_dataclasses import AsDataArray, Attr, Coordof, Data +from dems.d2 import Cube from . import convert # type hints QuantityLike = Union[Quantity, str] UnitLike = Union[Unit, str] -Ln = Literal["lon"] -Lt = Literal["lat"] -Ch = Literal["chan"] - - -@dataclass -class Weight: - data: Data[Tuple[Ln, Lt, Ch], float] - long_name: Attr[str] = "Data weights" - - -@dataclass -class Lon: - data: Data[Ln, float] - long_name: Attr[str] = "Sky longitude" - units: Attr[str] = "deg" - - -@dataclass -class Lat: - data: Data[Lt, float] - long_name: Attr[str] = "Sky latitude" - units: Attr[str] = "deg" - - -@dataclass -class Chan: - data: Data[Ch, int] - long_name: Attr[str] = "Channel ID" - - -@dataclass -class Frame: - data: Data[Tuple[()], str] - long_name: Attr[str] = "Sky coordinate frame" - - -@dataclass -class D2MkidID: - data: Data[Ch, int] - long_name: Attr[str] = "[DESHIMA 2.0] MKID ID" - - -@dataclass -class D2MkidType: - data: Data[Ch, str] - long_name: Attr[str] = "[DESHIMA 2.0] MKID type" - - -@dataclass -class D2MkidFrequency: - data: Data[Ch, float] - long_name: Attr[str] = "[DESHIMA 2.0] MKID center frequency" - units: Attr[str] = "Hz" - - -@dataclass -class Cube(AsDataArray): - """Cube of DESHIMA 2.0.""" - - data: Data[Tuple[Ln, Lt, Ch], Any] - weight: Coordof[Weight] = 1.0 - lon: Coordof[Lon] = 0.0 - lat: Coordof[Lat] = 0.0 - chan: Coordof[Chan] = 0 - frame: Coordof[Frame] = "altaz" - d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 - d2_mkid_id: Coordof[D2MkidID] = 0.0 - d2_mkid_type: Coordof[D2MkidType] = "" def cube( @@ -106,8 +36,11 @@ def cube( Cube DataArray. """ - dlon = Quantity(skycoord_grid).to(dems.lon.attrs["units"]).value - dlat = Quantity(skycoord_grid).to(dems.lat.attrs["units"]).value + dems = convert.coord_units(dems, "lon", "deg") + dems = convert.coord_units(dems, "lat", "deg") + dlon = Quantity(skycoord_grid).to("deg").value + dlat = Quantity(skycoord_grid).to("deg").value + lon_min = np.floor(dems.lon.min() / dlon) * dlon lon_max = np.ceil(dems.lon.max() / dlon) * dlon lat_min = np.floor(dems.lat.min() / dlat) * dlat @@ -123,21 +56,22 @@ def cube( dems = dems.copy(data=dems.data) dems.coords.update({"index": index}) - grid = dems.groupby("index").mean("time") + gridded = dems.groupby("index").mean("time") - temp = np.full([n_lat * n_lon, n_chan], np.nan) - temp[grid.index.values] = grid.values - data = temp.reshape((n_lat, n_lon, n_chan)).swapaxes(0, 1) + data = np.full([n_lat * n_lon, n_chan], np.nan) + data[gridded.index.values] = gridded.values + data = data.reshape(n_lat, n_lon, n_chan).transpose(2, 0, 1) cube = Cube.new( data=data, - lon=lon.values, - lat=lat.values, - frame=dems.frame.values, - d2_mkid_id=dems.d2_mkid_id.values, - d2_mkid_frequency=dems.d2_mkid_frequency.values, - d2_mkid_type=dems.d2_mkid_type.values, + lat=lat, + lon=lon, + chan=dems.chan, + frame=dems.frame, + d2_mkid_id=dems.d2_mkid_id, + d2_mkid_frequency=dems.d2_mkid_frequency, + d2_mkid_type=dems.d2_mkid_type, ) - cube = convert.units(cube, "lon", skycoord_units) - cube = convert.units(cube, "lat", skycoord_units) + cube = convert.coord_units(cube, "lon", skycoord_units) + cube = convert.coord_units(cube, "lat", skycoord_units) return cube diff --git a/decode/plot.py b/decode/plot.py index 80c9e2d..574e6a6 100644 --- a/decode/plot.py +++ b/decode/plot.py @@ -7,13 +7,10 @@ # dependencies import xarray as xr +from dems.d2 import MS_DIMS as DEMS_DIMS from matplotlib.artist import Artist -# constants -DEMS_DIMS = "time", "chan" - - def data( data: xr.DataArray, /, diff --git a/poetry.lock b/poetry.lock index b6ea1ad..4cd468e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -99,20 +99,21 @@ test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pytest (>=7.0,<8)" [[package]] name = "asttokens" -version = "2.4.0" +version = "2.4.1" description = "Annotate AST trees with source code positions" optional = false python-versions = "*" files = [ - {file = "asttokens-2.4.0-py2.py3-none-any.whl", hash = "sha256:cf8fc9e61a86461aa9fb161a14a0841a03c405fa829ac6b202670b3495d2ce69"}, - {file = "asttokens-2.4.0.tar.gz", hash = "sha256:2e0171b991b2c959acc6c49318049236844a5da1d65ba2672c4880c1c894834e"}, + {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, + {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"}, ] [package.dependencies] six = ">=1.12.0" [package.extras] -test = ["astroid", "pytest"] +astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"] +test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] [[package]] name = "babel" @@ -131,17 +132,6 @@ setuptools = {version = "*", markers = "python_version >= \"3.12\""} [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] -[[package]] -name = "backcall" -version = "0.2.0" -description = "Specifications for callback functions passed in to an API" -optional = false -python-versions = "*" -files = [ - {file = "backcall-0.2.0-py2.py3-none-any.whl", hash = "sha256:fbbce6a29f263178a1f7915c1940bde0ec2b2a967566fe1c65c1dfb7422bd255"}, - {file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"}, -] - [[package]] name = "beautifulsoup4" version = "4.12.2" @@ -215,101 +205,101 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.3.1" +version = "3.3.2" description = "The Real First Universal Charset Detector. 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