From d49f4750f1561a97736fee2f97bd357903ff09b3 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 04:41:52 +0000 Subject: [PATCH 1/9] #51 Add d2_ddb_version to MS and Cube --- README.md | 1 + dems/d2.py | 2 ++ 2 files changed, 3 insertions(+) diff --git a/README.md b/README.md index 38aa518..10f974f 100644 --- a/README.md +++ b/README.md @@ -83,5 +83,6 @@ da = MS.new( | | d2_mkid_frequency | Coordinate | [DESHIMA 2.0] MKID center frequency | Hz | 0.0 | numpy.ndarray | (chan,) | float64 | | | d2_roomchopper_isblocking | Coordinate | [DESHIMA 2.0] Whether room chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_skychopper_isblocking | Coordinate | [DESHIMA 2.0] Whether sky chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | +| | d2_ddb_version | Attribute | [DESHIMA 2.0] DDB version | - | "" | str | - | - | | | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | "0.8.0" | str | - | - | | | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "2.0.0" | str | - | - | diff --git a/dems/d2.py b/dems/d2.py index a88d61e..238480d 100644 --- a/dems/d2.py +++ b/dems/d2.py @@ -382,6 +382,7 @@ class MS(AsDataArray): d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 d2_roomchopper_isblocking: Coordof[D2RoomchopperIsblocking] = False d2_skychopper_isblocking: Coordof[D2SkychopperIsblocking] = False + d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = DEMS_VERSION d2_demerge_version: Attr[str] = DEMERGE_VERSION @@ -415,5 +416,6 @@ class Cube(AsDataArray): d2_mkid_id: Coordof[D2MkidID] = 0 d2_mkid_type: Coordof[D2MkidType] = "" d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 + d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = DEMS_VERSION d2_demerge_version: Attr[str] = DEMERGE_VERSION From 5a43b94c6000198a7d90557430d1cedc16648520 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 04:49:41 +0000 Subject: [PATCH 2/9] #51 Add d2_merge_datetime to MS and Cube --- README.md | 1 + dems/d2.py | 12 +++++++++--- 2 files changed, 10 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 10f974f..d7d5fd2 100644 --- a/README.md +++ b/README.md @@ -86,3 +86,4 @@ da = MS.new( | | d2_ddb_version | Attribute | [DESHIMA 2.0] DDB version | - | "" | str | - | - | | | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | "0.8.0" | str | - | - | | | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "2.0.0" | str | - | - | +| | d2_merge_datetime | Attribute | [DESHIMA 2.0] Date and time of the data merge | - | - | str | - | - | diff --git a/dems/d2.py b/dems/d2.py index 238480d..a1df2a5 100644 --- a/dems/d2.py +++ b/dems/d2.py @@ -7,7 +7,8 @@ # standard library -from dataclasses import dataclass +from dataclasses import dataclass, field +from datetime import datetime, timezone from typing import Any, Literal, Tuple @@ -318,7 +319,7 @@ class D2SkychopperIsblocking: long_name: Attr[str] = "[DESHIMA 2.0] Whether sky chopper is blocking sensor" -@dataclass(frozen=True) +@dataclass class MS(AsDataArray): """Measurement set of DESHIMA 2.0.""" @@ -385,9 +386,13 @@ class MS(AsDataArray): d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = DEMS_VERSION d2_demerge_version: Attr[str] = DEMERGE_VERSION + d2_merge_datetime: Attr[str] = field(init=False) + + def __post_init__(self) -> None: + self.d2_merge_datetime = datetime.now(timezone.utc).isoformat() -@dataclass(frozen=True) +@dataclass class Cube(AsDataArray): """Spectral cube of DESHIMA 2.0.""" @@ -419,3 +424,4 @@ class Cube(AsDataArray): d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = DEMS_VERSION d2_demerge_version: Attr[str] = DEMERGE_VERSION + d2_merge_datetime: Attr[str] = "" From 1e1190bf4b5c3191342241c146695f9aeb339dfd Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 04:57:53 +0000 Subject: [PATCH 3/9] #51 Set d2_dems_version dynamically --- README.md | 2 +- dems/d2.py | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index d7d5fd2..db922d7 100644 --- a/README.md +++ b/README.md @@ -84,6 +84,6 @@ da = MS.new( | | d2_roomchopper_isblocking | Coordinate | [DESHIMA 2.0] Whether room chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_skychopper_isblocking | Coordinate | [DESHIMA 2.0] Whether sky chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_ddb_version | Attribute | [DESHIMA 2.0] DDB version | - | "" | str | - | - | -| | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | "0.8.0" | str | - | - | +| | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | - | str | - | - | | | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "2.0.0" | str | - | - | | | d2_merge_datetime | Attribute | [DESHIMA 2.0] Date and time of the data merge | - | - | str | - | - | diff --git a/dems/d2.py b/dems/d2.py index a1df2a5..a825e2d 100644 --- a/dems/d2.py +++ b/dems/d2.py @@ -31,8 +31,6 @@ -2475718.801708271, ) CUBE_DIMS = "chan", "lat", "lon" -DEMS_VERSION = __version__ -DEMERGE_VERSION = "2.0.0" MS_DIMS = "time", "chan" @@ -384,11 +382,13 @@ class MS(AsDataArray): d2_roomchopper_isblocking: Coordof[D2RoomchopperIsblocking] = False d2_skychopper_isblocking: Coordof[D2SkychopperIsblocking] = False d2_ddb_version: Attr[str] = "" - d2_dems_version: Attr[str] = DEMS_VERSION + d2_dems_version: Attr[str] = field(init=False) d2_demerge_version: Attr[str] = DEMERGE_VERSION d2_merge_datetime: Attr[str] = field(init=False) def __post_init__(self) -> None: + """Set dynamic attributes.""" + self.d2_dems_version = __version__ self.d2_merge_datetime = datetime.now(timezone.utc).isoformat() @@ -422,6 +422,6 @@ class Cube(AsDataArray): d2_mkid_type: Coordof[D2MkidType] = "" d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 d2_ddb_version: Attr[str] = "" - d2_dems_version: Attr[str] = DEMS_VERSION + d2_dems_version: Attr[str] = "" d2_demerge_version: Attr[str] = DEMERGE_VERSION d2_merge_datetime: Attr[str] = "" From 6f4d5fb00aee3c6aca4788217de2521c5ae74f4b Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 04:59:04 +0000 Subject: [PATCH 4/9] #51 Remove default value of d2_demerge_version --- README.md | 2 +- dems/d2.py | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index db922d7..1933abf 100644 --- a/README.md +++ b/README.md @@ -85,5 +85,5 @@ da = MS.new( | | d2_skychopper_isblocking | Coordinate | [DESHIMA 2.0] Whether sky chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_ddb_version | Attribute | [DESHIMA 2.0] DDB version | - | "" | str | - | - | | | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | - | str | - | - | -| | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "2.0.0" | str | - | - | +| | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "" | str | - | - | | | d2_merge_datetime | Attribute | [DESHIMA 2.0] Date and time of the data merge | - | - | str | - | - | diff --git a/dems/d2.py b/dems/d2.py index a825e2d..8b9a140 100644 --- a/dems/d2.py +++ b/dems/d2.py @@ -383,7 +383,7 @@ class MS(AsDataArray): d2_skychopper_isblocking: Coordof[D2SkychopperIsblocking] = False d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = field(init=False) - d2_demerge_version: Attr[str] = DEMERGE_VERSION + d2_demerge_version: Attr[str] = "" d2_merge_datetime: Attr[str] = field(init=False) def __post_init__(self) -> None: @@ -423,5 +423,5 @@ class Cube(AsDataArray): d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 d2_ddb_version: Attr[str] = "" d2_dems_version: Attr[str] = "" - d2_demerge_version: Attr[str] = DEMERGE_VERSION + d2_demerge_version: Attr[str] = "" d2_merge_datetime: Attr[str] = "" From 4afa9f430ce4ff77879830bdf95e70b30d8f4380 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 05:01:04 +0000 Subject: [PATCH 5/9] #51 Reorder fields alphabetically --- README.md | 2 +- dems/d2.py | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 1933abf..dc34eaf 100644 --- a/README.md +++ b/README.md @@ -84,6 +84,6 @@ da = MS.new( | | d2_roomchopper_isblocking | Coordinate | [DESHIMA 2.0] Whether room chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_skychopper_isblocking | Coordinate | [DESHIMA 2.0] Whether sky chopper is blocking sensor | - | False | numpy.ndarray | (time,) | bool | | | d2_ddb_version | Attribute | [DESHIMA 2.0] DDB version | - | "" | str | - | - | -| | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | - | str | - | - | | | d2_demerge_version | Attribute | [DESHIMA 2.0] demerge version | - | "" | str | - | - | +| | d2_dems_version | Attribute | [DESHIMA 2.0] DEMS version | - | - | str | - | - | | | d2_merge_datetime | Attribute | [DESHIMA 2.0] Date and time of the data merge | - | - | str | - | - | diff --git a/dems/d2.py b/dems/d2.py index 8b9a140..5e9a9de 100644 --- a/dems/d2.py +++ b/dems/d2.py @@ -382,8 +382,8 @@ class MS(AsDataArray): d2_roomchopper_isblocking: Coordof[D2RoomchopperIsblocking] = False d2_skychopper_isblocking: Coordof[D2SkychopperIsblocking] = False d2_ddb_version: Attr[str] = "" - d2_dems_version: Attr[str] = field(init=False) d2_demerge_version: Attr[str] = "" + d2_dems_version: Attr[str] = field(init=False) d2_merge_datetime: Attr[str] = field(init=False) def __post_init__(self) -> None: @@ -422,6 +422,6 @@ class Cube(AsDataArray): d2_mkid_type: Coordof[D2MkidType] = "" d2_mkid_frequency: Coordof[D2MkidFrequency] = 0.0 d2_ddb_version: Attr[str] = "" - d2_dems_version: Attr[str] = "" d2_demerge_version: Attr[str] = "" + d2_dems_version: Attr[str] = "" d2_merge_datetime: Attr[str] = "" From bcb880bcec58aabd5d2ea5bd459a1907a7f42501 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 05:02:16 +0000 Subject: [PATCH 6/9] #51 Update project dependencies --- 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(>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] @@ -609,18 +602,18 @@ files = [ [[package]] name = "traitlets" -version = "5.13.0" +version = "5.14.0" description = "Traitlets Python configuration system" optional = false python-versions = ">=3.8" files = [ - {file = "traitlets-5.13.0-py3-none-any.whl", hash = "sha256:baf991e61542da48fe8aef8b779a9ea0aa38d8a54166ee250d5af5ecf4486619"}, - {file = "traitlets-5.13.0.tar.gz", hash = "sha256:9b232b9430c8f57288c1024b34a8f0251ddcc47268927367a0dd3eeaca40deb5"}, + {file = "traitlets-5.14.0-py3-none-any.whl", hash = "sha256:f14949d23829023013c47df20b4a76ccd1a85effb786dc060f34de7948361b33"}, + {file = "traitlets-5.14.0.tar.gz", hash = "sha256:fcdaa8ac49c04dfa0ed3ee3384ef6dfdb5d6f3741502be247279407679296772"}, ] [package.extras] docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] -test = ["argcomplete (>=3.0.3)", "mypy (>=1.6.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"] +test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"] [[package]] name = "typing-extensions" @@ -646,24 +639,24 @@ files = [ [[package]] name = "wcwidth" -version = "0.2.9" +version = "0.2.12" description = "Measures the displayed width of unicode strings in a terminal" optional = false python-versions = "*" files = [ - {file = "wcwidth-0.2.9-py2.py3-none-any.whl", hash = "sha256:9a929bd8380f6cd9571a968a9c8f4353ca58d7cd812a4822bba831f8d685b223"}, - {file = "wcwidth-0.2.9.tar.gz", hash = "sha256:a675d1a4a2d24ef67096a04b85b02deeecd8e226f57b5e3a72dbb9ed99d27da8"}, + {file = "wcwidth-0.2.12-py2.py3-none-any.whl", hash = "sha256:f26ec43d96c8cbfed76a5075dac87680124fa84e0855195a6184da9c187f133c"}, + {file = "wcwidth-0.2.12.tar.gz", hash = "sha256:f01c104efdf57971bcb756f054dd58ddec5204dd15fa31d6503ea57947d97c02"}, ] [[package]] name = "xarray" -version = "2023.10.1" +version = "2023.11.0" description = "N-D labeled arrays and datasets in Python" optional = false python-versions = ">=3.9" files = [ - {file = "xarray-2023.10.1-py3-none-any.whl", hash = "sha256:71ea549e9be6dfeab19c2736acf659967b861aad2397691a80e5fad0c61db2ad"}, - {file = "xarray-2023.10.1.tar.gz", hash = "sha256:9eeee170c3fc2f3321eb6ba40c17ffe4d8c98d49d55e4a3fba66a75bdc7dd9e5"}, + {file = "xarray-2023.11.0-py3-none-any.whl", hash = "sha256:933b5101e965120ed58e29525667ab34aafcea1886c236ade72a34d7bb465d9c"}, + {file = "xarray-2023.11.0.tar.gz", hash = "sha256:9a45e10741844b5f948d8e1e768b460df7e90696d18e2eff2c1d47f5d9d50252"}, ] [package.dependencies] @@ -672,7 +665,7 @@ packaging = ">=21.3" pandas = ">=1.4" [package.extras] -accel = ["bottleneck", "flox", "numbagg", "scipy"] +accel = ["bottleneck", "flox", "numbagg", "opt-einsum", "scipy"] complete = ["xarray[accel,io,parallel,viz]"] io = ["cftime", "fsspec", "h5netcdf", "netCDF4", "pooch", "pydap", "scipy", "zarr"] parallel = ["dask[complete]"] @@ -697,4 +690,4 @@ xarray = {version = ">=2022.3,<2024.0", markers = "python_version >= \"3.9\" and [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.13" -content-hash = "280886e8f86512f360ffafc153a596507133d86f2789c19ce73cb78eb0b9a463" +content-hash = "9851f762df8ccbcdb85d2b847667e879e2da509dafedfebcd6264da2e0bc68f4" diff --git a/pyproject.toml b/pyproject.toml index 3c52bfd..ef10412 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,8 +11,8 @@ python = ">=3.9, <3.13" xarray-dataclasses = "^1.7" [tool.poetry.group.dev.dependencies] -black = "^23.10" -ipython = "^8.16" +black = "^23.11" +ipython = "^8.18" pyright = "^1.1" pytest = "^7.4" From 780e576b312e753bec433b8f9be51ec9dd239cf8 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 05:04:19 +0000 Subject: [PATCH 7/9] #51 Pin Poetry version (1.7.1) --- .devcontainer/devcontainer.json | 2 +- .github/workflows/pypi.yaml | 2 +- .github/workflows/tests.yaml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index a963e29..0618f72 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -1,7 +1,7 @@ { "name": "dems", "image":"python:3.11", - "onCreateCommand": "pip install poetry==1.6.1", + "onCreateCommand": "pip install poetry==1.7.1", "postCreateCommand": "poetry install", "containerEnv": { "POETRY_VIRTUALENVS_CREATE": "false" diff --git a/.github/workflows/pypi.yaml b/.github/workflows/pypi.yaml index 15dff36..4172331 100644 --- a/.github/workflows/pypi.yaml +++ b/.github/workflows/pypi.yaml @@ -17,4 +17,4 @@ jobs: with: python-version: "3.12" - name: Publish package to PyPI - run: pip install poetry && poetry publish --build + run: pip install poetry==1.7.1 && poetry publish --build diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index d059824..7f8ca0f 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -24,7 +24,7 @@ jobs: with: python-version: ${{ matrix.python }} - name: Install project dependencies - run: pip install poetry && poetry install + run: pip install poetry==1.7.1 && poetry install - name: Test code's formatting (Black) run: black --check dems tests - name: Test code's typing (Pyright) From d242583bea615cc49713813abbac16aa22148606 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 05:05:49 +0000 Subject: [PATCH 8/9] =?UTF-8?q?#51=20Update=20package=20version=20(0.8.0?= =?UTF-8?q?=20=E2=86=92=200.9.0)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CITATION.cff | 2 +- dems/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index a70df9f..fcf8ee5 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -3,7 +3,7 @@ message: "If you use this software, please cite it as below." title: "dems" abstract: "DESHIMA measurement set by DataArray" -version: 0.8.0 +version: 0.9.0 date-released: 2023-11-07 license: "MIT" doi: "10.5281/zenodo.8151950" diff --git a/dems/__init__.py b/dems/__init__.py index 9cc8d76..a0b3812 100644 --- a/dems/__init__.py +++ b/dems/__init__.py @@ -1,5 +1,5 @@ __all__ = ["d1", "d2"] -__version__ = "0.8.0" +__version__ = "0.9.0" # submodules diff --git a/pyproject.toml b/pyproject.toml index ef10412..b7a1642 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "dems" -version = "0.8.0" +version = "0.9.0" description = "DESHIMA measurement set by DataArray" authors = ["Akio Taniguchi "] license = "MIT" From b0b65f8d6aa82f7afff4e7742985da84746a515e Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Mon, 4 Dec 2023 05:06:19 +0000 Subject: [PATCH 9/9] #51 Update release date --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index fcf8ee5..2e4ac9f 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -4,7 +4,7 @@ message: "If you use this software, please cite it as below." title: "dems" abstract: "DESHIMA measurement set by DataArray" version: 0.9.0 -date-released: 2023-11-07 +date-released: 2023-12-04 license: "MIT" doi: "10.5281/zenodo.8151950" url: "https://github.com/deshima-dev/dems"