From 26fcb0eca60ef82f1be535c99b521144d20864c7 Mon Sep 17 00:00:00 2001 From: Akio Taniguchi Date: Tue, 14 Jun 2022 16:00:15 +0000 Subject: [PATCH 1/2] #78 Update project dependencies --- poetry.lock | 1292 +++++++++++++++++++++--------------------------- pyproject.toml | 28 +- 2 files changed, 577 insertions(+), 743 deletions(-) diff --git a/poetry.lock b/poetry.lock index 63f2cc4..2a2a068 100644 --- a/poetry.lock +++ b/poetry.lock @@ -8,7 +8,7 @@ python-versions = "*" [[package]] name = "appnope" -version = "0.1.2" +version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" category = "main" optional = false @@ -16,14 +16,34 @@ python-versions = "*" [[package]] name = "asteval" -version = "0.9.26" +version = "0.9.27" description = "Safe, minimalistic evaluator of python expression using ast module" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" + +[package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} + +[package.extras] +all = ["build", "twine", "coverage", "pytest", "pytest-cov", "sphinx"] +dev = ["build", "twine"] +doc = ["sphinx"] +test = ["coverage", "pytest", "pytest-cov"] + +[[package]] +name = "asttokens" +version = "2.0.5" +description = "Annotate AST trees with source code positions" +category = "main" +optional = false +python-versions = "*" [package.dependencies] -importlib_metadata = {version = "*", markers = "python_version < \"3.8\""} +six = "*" + +[package.extras] +test = ["astroid", "pytest"] [[package]] name = "atomicwrites" @@ -49,11 +69,11 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> [[package]] name = "babel" -version = "2.9.1" +version = "2.10.2" description = "Internationalization utilities" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] pytz = ">=2015.7" @@ -68,11 +88,11 @@ python-versions = "*" [[package]] name = "beautifulsoup4" -version = "4.10.0" +version = "4.11.1" description = "Screen-scraping library" category = "dev" optional = false -python-versions = ">3.0.0" +python-versions = ">=3.6.0" [package.dependencies] soupsieve = ">1.2" @@ -83,7 +103,7 @@ lxml = ["lxml"] [[package]] name = "black" -version = "22.1.0" +version = "22.3.0" description = "The uncompromising code formatter." category = "dev" optional = false @@ -94,7 +114,7 @@ click = ">=8.0.0" mypy-extensions = ">=0.4.3" pathspec = ">=0.9.0" platformdirs = ">=2" -tomli = ">=1.1.0" +tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""} typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} @@ -106,26 +126,15 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "certifi" -version = "2021.10.8" +version = "2022.5.18.1" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false -python-versions = "*" - -[[package]] -name = "cffi" -version = "1.15.0" -description = "Foreign Function Interface for Python calling C code." -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -pycparser = "*" +python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "2.0.11" +version = "2.0.12" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false @@ -136,11 +145,11 @@ unicode_backport = ["unicodedata2"] [[package]] name = "click" -version = "8.0.3" +version = "8.1.3" description = "Composable command line interface toolkit" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} @@ -162,14 +171,6 @@ category = "main" optional = false python-versions = ">=3.6" -[[package]] -name = "debugpy" -version = "1.5.1" -description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" -optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" - [[package]] name = "decorator" version = "5.1.1" @@ -180,35 +181,36 @@ python-versions = ">=3.5" [[package]] name = "docutils" -version = "0.17.1" +version = "0.18.1" description = "Docutils -- Python Documentation Utilities" category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] -name = "entrypoints" -version = "0.4" -description = "Discover and load entry points from installed packages." -category = "dev" +name = "executing" +version = "0.8.3" +description = "Get the currently executing AST node of a frame, and other information" +category = "main" optional = false -python-versions = ">=3.6" +python-versions = "*" [[package]] name = "fonttools" -version = "4.29.1" +version = "4.33.3" description = "Tools to manipulate font files" category = "main" optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] graphite = ["lz4 (>=1.7.4.2)"] interpolatable = ["scipy", "munkres"] lxml = ["lxml (>=4.0,<5)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] +repacker = ["uharfbuzz (>=0.23.0)"] symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] @@ -241,7 +243,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.10.1" +version = "4.11.4" description = "Read metadata from Python packages" category = "main" optional = false @@ -252,9 +254,9 @@ typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "iniconfig" @@ -265,33 +267,44 @@ optional = false python-versions = "*" [[package]] -name = "ipykernel" -version = "6.8.0" -description = "IPython Kernel for Jupyter" -category = "dev" +name = "ipython" +version = "7.34.0" +description = "IPython: Productive Interactive Computing" +category = "main" optional = false python-versions = ">=3.7" [package.dependencies] -appnope = {version = "*", markers = "platform_system == \"Darwin\""} -debugpy = ">=1.0.0,<2.0" -ipython = ">=7.23.1" -jupyter-client = "<8.0" -matplotlib-inline = ">=0.1.0,<0.2.0" -nest-asyncio = "*" -tornado = ">=4.2,<7.0" -traitlets = ">=5.1.0,<6.0" +appnope = {version = "*", markers = "sys_platform == \"darwin\""} +backcall = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} +decorator = "*" +jedi = ">=0.16" +matplotlib-inline = "*" +pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} +pickleshare = "*" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +pygments = "*" +traitlets = ">=4.2" [package.extras] -test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] +all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"] +doc = ["Sphinx (>=1.3)"] +kernel = ["ipykernel"] +nbconvert = ["nbconvert"] +nbformat = ["nbformat"] +notebook = ["notebook", "ipywidgets"] +parallel = ["ipyparallel"] +qtconsole = ["qtconsole"] +test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] [[package]] name = "ipython" -version = "7.31.1" +version = "8.4.0" description = "IPython: Productive Interactive Computing" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] appnope = {version = "*", markers = "sys_platform == \"darwin\""} @@ -303,19 +316,22 @@ matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" -pygments = "*" -traitlets = ">=4.2" +pygments = ">=2.4.0" +stack-data = "*" +traitlets = ">=5" [package.extras] -all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"] +all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"] +black = ["black"] doc = ["Sphinx (>=1.3)"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] nbformat = ["nbformat"] -notebook = ["notebook", "ipywidgets"] +notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] -test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] +test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] +test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"] [[package]] name = "jedi" @@ -334,11 +350,11 @@ testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] name = "jinja2" -version = "3.0.3" +version = "3.1.2" description = "A very fast and expressive template engine." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] MarkupSafe = ">=2.0" @@ -346,39 +362,6 @@ MarkupSafe = ">=2.0" [package.extras] i18n = ["Babel (>=2.7)"] -[[package]] -name = "jupyter-client" -version = "7.1.2" -description = "Jupyter protocol implementation and client libraries" -category = "dev" -optional = false -python-versions = ">=3.6.1" - -[package.dependencies] -entrypoints = "*" -jupyter-core = ">=4.6.0" -nest-asyncio = ">=1.5" -python-dateutil = ">=2.1" -pyzmq = ">=13" -tornado = ">=4.1" -traitlets = "*" - -[package.extras] -doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"] - -[[package]] -name = "jupyter-core" -version = "4.9.1" -description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" -optional = false -python-versions = ">=3.6" - -[package.dependencies] -pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} -traitlets = "*" - [[package]] name = "jupyter-io" version = "0.2.0" @@ -394,12 +377,15 @@ pandas = ">=0.25" [[package]] name = "kiwisolver" -version = "1.3.2" +version = "1.4.3" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false python-versions = ">=3.7" +[package.dependencies] +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + [[package]] name = "lmfit" version = "1.0.3" @@ -416,37 +402,37 @@ uncertainties = ">=3.0.1" [[package]] name = "markdown-it-py" -version = "2.0.1" +version = "2.1.0" description = "Python port of markdown-it. Markdown parsing, done right!" category = "dev" optional = false -python-versions = "~=3.6" +python-versions = ">=3.7" [package.dependencies] -attrs = ">=19,<22" mdurl = ">=0.1,<1.0" -typing-extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} +typing_extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} [package.extras] benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"] code_style = ["pre-commit (==2.6)"] -compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.2.2,<3.3.0)", "mistletoe-ebp (>=0.10.0,<0.11.0)", "mistune (>=0.8.4,<0.9.0)", "panflute (>=1.12,<2.0)"] +compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.3.6,<3.4.0)", "mistletoe (>=0.8.1,<0.9.0)", "mistune (>=2.0.2,<2.1.0)", "panflute (>=2.1.3,<2.2.0)"] linkify = ["linkify-it-py (>=1.0,<2.0)"] plugins = ["mdit-py-plugins"] -rtd = ["myst-nb (==0.13.0a1)", "pyyaml", "sphinx (>=2,<4)", "sphinx-copybutton", "sphinx-panels (>=0.4.0,<0.5.0)", "sphinx-book-theme"] +profiling = ["gprof2dot"] +rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx-book-theme"] testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] [[package]] name = "markupsafe" -version = "2.0.1" +version = "2.1.1" description = "Safely add untrusted strings to HTML/XML markup." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.5.1" +version = "3.5.2" description = "Python plotting package" category = "main" optional = false @@ -492,11 +478,11 @@ testing = ["coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"] [[package]] name = "mdurl" -version = "0.1.0" +version = "0.1.1" description = "Markdown URL utilities" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "mypy-extensions" @@ -508,41 +494,42 @@ python-versions = "*" [[package]] name = "myst-parser" -version = "0.16.1" +version = "0.18.0" description = "An extended commonmark compliant parser, with bridges to docutils & sphinx." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -docutils = ">=0.15,<0.18" +docutils = ">=0.15,<0.19" jinja2 = "*" markdown-it-py = ">=1.0.0,<3.0.0" mdit-py-plugins = ">=0.3.0,<0.4.0" pyyaml = "*" -sphinx = ">=3.1,<5" +sphinx = ">=4,<6" +typing-extensions = "*" [package.extras] code_style = ["pre-commit (>=2.12,<3.0)"] linkify = ["linkify-it-py (>=1.0,<2.0)"] -rtd = ["ipython", "sphinx-book-theme (>=0.1.0,<0.2.0)", "sphinx-panels (>=0.5.2,<0.6.0)", "sphinxcontrib-bibtex (>=2.1,<3.0)", "sphinxext-rediraffe (>=0.2,<1.0)", "sphinxcontrib.mermaid (>=0.6.3,<0.7.0)", "sphinxext-opengraph (>=0.4.2,<0.5.0)"] -testing = ["beautifulsoup4", "coverage", "docutils (>=0.17.0,<0.18.0)", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"] +rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxext-rediraffe (>=0.2.7,<0.3.0)", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)"] +testing = ["beautifulsoup4", "coverage", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)", "sphinx-pytest"] [[package]] -name = "nest-asyncio" -version = "1.5.4" -description = "Patch asyncio to allow nested event loops" -category = "dev" +name = "numpy" +version = "1.21.6" +description = "NumPy is the fundamental package for array computing with Python." +category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7,<3.11" [[package]] name = "numpy" -version = "1.21.5" +version = "1.22.4" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false -python-versions = ">=3.7,<3.11" +python-versions = ">=3.8" [[package]] name = "packaging" @@ -575,6 +562,27 @@ pytz = ">=2017.3" [package.extras] test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] +[[package]] +name = "pandas" +version = "1.4.2" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = [ + {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, + {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""}, + {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""}, + {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, +] +python-dateutil = ">=2.8.1" +pytz = ">=2020.1" + +[package.extras] +test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] + [[package]] name = "parso" version = "0.8.3" @@ -616,23 +624,27 @@ python-versions = "*" [[package]] name = "pillow" -version = "9.0.1" +version = "9.1.1" description = "Python Imaging Library (Fork)" category = "main" optional = false python-versions = ">=3.7" +[package.extras] +docs = ["olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinx-rtd-theme (>=1.0)", "sphinxext-opengraph"] +tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] + [[package]] name = "platformdirs" -version = "2.4.1" +version = "2.5.2" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false python-versions = ">=3.7" [package.extras] -docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] +test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] [[package]] name = "pluggy" @@ -651,7 +663,7 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "prompt-toolkit" -version = "3.0.26" +version = "3.0.29" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false @@ -668,6 +680,17 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "pure-eval" +version = "0.2.2" +description = "Safely evaluate AST nodes without side effects" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +tests = ["pytest"] + [[package]] name = "py" version = "1.11.0" @@ -676,17 +699,9 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -[[package]] -name = "pycparser" -version = "2.21" -description = "C parser in Python" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - [[package]] name = "pydata-sphinx-theme" -version = "0.8.0" +version = "0.9.0" description = "Bootstrap-based Sphinx theme from the PyData community" category = "dev" optional = false @@ -695,40 +710,41 @@ python-versions = ">=3.7" [package.dependencies] beautifulsoup4 = "*" docutils = "!=0.17.0" -sphinx = "*" +packaging = "*" +sphinx = ">=4.0.2" [package.extras] -doc = ["numpydoc", "myst-parser", "pandas", "pytest", "pytest-regressions", "sphinxext-rediraffe", "sphinx-sitemap", "jupyter-sphinx", "plotly", "numpy", "xarray"] +doc = ["numpydoc", "myst-parser", "pandas", "pytest", "pytest-regressions", "sphinxext-rediraffe", "sphinx-sitemap", "jupyter-sphinx", "plotly", "numpy", "xarray", "sphinx-design"] test = ["pytest", "pydata-sphinx-theme"] coverage = ["pytest-cov", "codecov", "pydata-sphinx-theme"] dev = ["pyyaml", "pre-commit", "nox", "pydata-sphinx-theme"] [[package]] name = "pygments" -version = "2.11.2" +version = "2.12.0" description = "Pygments is a syntax highlighting package written in 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