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Merge pull request #46 from dholab/proposals
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GitHub Workflow issues appear to be finally resolved (for now)
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@nrminor
nrminor authored Oct 21, 2024
2 parents a2d661d + 5e3f78d commit 52dfe9d
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9 changes: 9 additions & 0 deletions .github/workflows/generate_and_render_readme.yml
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Expand Up @@ -22,6 +22,8 @@ jobs:
steps:
- name: Checkout Code
uses: actions/checkout@v3
with:
fetch-depth: 0

- name: Set up Python
uses: actions/setup-python@v4
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steps:
- name: Checkout Code
uses: actions/checkout@v3
with:
fetch-depth: 0

- name: Pull latest changes from proposals
run: |
git fetch origin proposals
git pull origin proposals
- name: Set up Python
uses: actions/setup-python@v4
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2 changes: 1 addition & 1 deletion DETECTION_RESULTS.tsv
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Expand Up @@ -217,4 +217,4 @@ dholab_30688_13 dholab_carton_0186 2024-10-07 qPCR 36.01 18.3 DHO_CN_H5specifi
dholab_30688_14 dholab_carton_0187 2024-10-07 qPCR 35.7 23.2 DHO_CN_H5specific01_primers.fasta DHO_CN_H5specific01_probe.fasta 400ul sample added to MagMax wastewater ultra x96 isolation on Kingfisher Apex TRUE WI dholab 2024-10-21
dholab_30688_15 dholab_carton_0188 2024-10-07 qPCR DHO_CN_H5specific01_primers.fasta DHO_CN_H5specific01_probe.fasta 400ul sample added to MagMax wastewater ultra x96 isolation on Kingfisher Apex FALSE WI dholab 2024-10-21
dholab_30688_16 dholab_carton_0189 2024-10-07 qPCR DHO_CN_H5specific01_primers.fasta DHO_CN_H5specific01_probe.fasta 400ul sample added to MagMax wastewater ultra x96 isolation on Kingfisher Apex FALSE WI dholab 2024-10-21
dholab_30688_17 dholab_carton_0190 2024-10-07 qPCR 34.095 77.6 DHO_CN_H5specific01_primers.fasta DHO_CN_H5specific01_probe.fasta 400ul sample added to MagMax wastewater ultra x96 isolation on Kingfisher Apex TRUE WI dholab 2024-10-21
dholab_30688_17 dholab_carton_0190 2024-10-07 qPCR 34.095 77.6 DHO_CN_H5specific01_primers.fasta DHO_CN_H5specific01_probe.fasta 400ul sample added to MagMax wastewater ultra x96 isolation on Kingfisher Apex TRUE WI dholab 2024-10-21
40 changes: 20 additions & 20 deletions README.md
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Expand Up @@ -22,28 +22,28 @@ To submit results of your own, read over our [proposal instructions](docs/propos

## Positivity Tally by State

Processing Plant State | Total Cartons | Positive Cartons | Negative Cartons | Latest Date Sampled
Processing Plant State | Total Cartons | Negative Cartons | Positive Cartons | Latest Date Sampled
------------------------|-----------------|--------------------|--------------------|---------------------
CA | 1 | 0 | 1 | 2024-05-20
CO | 12 | 9 | 3 | 2024-09-24
FL | 1 | 0 | 1 | 2024-05-20
IA | 10 | 0 | 10 | 2024-07-30
ID | 1 | 0 | 1 | 2024-05-20
IL | 3 | 0 | 3 | 2024-06-17
IN | 6 | 1 | 5 | 2024-07-02
KS | 2 | 0 | 2 | 2024-07-02
KY | 4 | 1 | 3 | 2024-07-02
MI | 18 | 14 | 4 | 2024-09-24
MN | 6 | 0 | 6 | 2024-07-02
MO | 3 | 1 | 2 | 2024-09-10
NC | 2 | 0 | 2 | 2024-09-24
NY | 5 | 1 | 4 | 2024-09-24
OH | 3 | 0 | 3 | 2024-07-28
OR | 1 | 0 | 1 | 2024-05-20
CA | 1 | 1 | 0 | 2024-05-20
CO | 13 | 5 | 9 | 2024-10-07
FL | 1 | 1 | 0 | 2024-05-20
IA | 10 | 10 | 0 | 2024-07-30
ID | 1 | 1 | 0 | 2024-05-20
IL | 3 | 3 | 0 | 2024-06-17
IN | 6 | 5 | 1 | 2024-07-02
KS | 2 | 2 | 0 | 2024-07-02
KY | 4 | 3 | 1 | 2024-07-02
MI | 19 | 5 | 15 | 2024-10-07
MN | 6 | 6 | 0 | 2024-07-02
MO | 3 | 2 | 1 | 2024-09-10
NC | 2 | 2 | 0 | 2024-09-24
NY | 5 | 4 | 1 | 2024-09-24
OH | 3 | 3 | 0 | 2024-07-28
OR | 1 | 1 | 0 | 2024-05-20
TX | 2 | 1 | 1 | 2024-06-05
UT | 1 | 0 | 1 | 2024-05-02
VA | 2 | 0 | 2 | 2024-07-02
WI | 89 | 7 | 82 | 2024-09-24
UT | 1 | 1 | 0 | 2024-05-02
VA | 2 | 2 | 0 | 2024-07-02
WI | 103 | 93 | 10 | 2024-10-07

## Sampling Dairy Products for HPAI RNA

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40 changes: 20 additions & 20 deletions assets/positivity_tally.tsv
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Processing Plant State Total Cartons Positive Cartons Negative Cartons Latest Date Sampled
CA 1 0 1 2024-05-20
CO 13 9 4 2024-10-07
FL 1 0 1 2024-05-20
IA 10 0 10 2024-07-30
ID 1 0 1 2024-05-20
IL 3 0 3 2024-06-17
IN 6 1 5 2024-07-02
KS 2 0 2 2024-07-02
KY 4 1 3 2024-07-02
MI 19 15 4 2024-10-07
MN 6 0 6 2024-07-02
MO 3 1 2 2024-09-10
NC 2 0 2 2024-09-24
NY 5 1 4 2024-09-24
OH 3 0 3 2024-07-28
OR 1 0 1 2024-05-20
Processing Plant State Total Cartons Negative Cartons Positive Cartons Latest Date Sampled
CA 1 1 0 2024-05-20
CO 13 5 9 2024-10-07
FL 1 1 0 2024-05-20
IA 10 10 0 2024-07-30
ID 1 1 0 2024-05-20
IL 3 3 0 2024-06-17
IN 6 5 1 2024-07-02
KS 2 2 0 2024-07-02
KY 4 3 1 2024-07-02
MI 19 5 15 2024-10-07
MN 6 6 0 2024-07-02
MO 3 2 1 2024-09-10
NC 2 2 0 2024-09-24
NY 5 4 1 2024-09-24
OH 3 3 0 2024-07-28
OR 1 1 0 2024-05-20
TX 2 1 1 2024-06-05
UT 1 0 1 2024-05-02
VA 2 0 2 2024-07-02
WI 103 10 93 2024-10-07
UT 1 1 0 2024-05-02
VA 2 2 0 2024-07-02
WI 103 93 10 2024-10-07
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