From 22826ec5bb3a67535cba26a33dd488929aa3fcd1 Mon Sep 17 00:00:00 2001 From: dicook Date: Sun, 21 Jul 2024 16:18:20 +1000 Subject: [PATCH] release version --- .Rbuildignore | 4 ++++ DESCRIPTION | 6 +++--- NEWS.md | 9 +++++++++ cran-comments.md | 10 +++++----- inst/CITATION | 34 +++++++++------------------------- vignettes/distances.Rmd | 2 +- vignettes/nullabor.Rmd | 12 ++++++------ 7 files changed, 37 insertions(+), 40 deletions(-) diff --git a/.Rbuildignore b/.Rbuildignore index c5d6f20..52b4aa7 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -9,3 +9,7 @@ ^doc$ ^Meta$ ^CRAN-RELEASE$ +^.github +^revdep +^CRAN-SUBMISSION$ +^nullabor.Rcheck diff --git a/DESCRIPTION b/DESCRIPTION index a76fc17..7ddecbe 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: nullabor -Version: 0.3.10 +Version: 0.3.12 Description: Tools for visual inference. Generate null data sets and null plots using permutation and simulation. Calculate distance metrics for a lineup, and examine the distributions of metrics. @@ -12,8 +12,8 @@ Authors@R: c( ) Maintainer: Di Cook License: GPL (>= 2) -URL: http://github.com/dicook/nullabor -BugReports: http://github.com/dicook/nullabor/issues +URL: https://github.com/dicook/nullabor +BugReports: https://github.com/dicook/nullabor/issues Imports: MASS, moments, diff --git a/NEWS.md b/NEWS.md index 9b3769b..7cc70a4 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,12 @@ +# nullabor 0.3.12 + +- CITATION revised to satisfy CRAN check +- And URLs in vignettes change to DOI because the DOI URL is apparently not valid according to the automated checks + +# nullabor 0.3.11 + +- URLs in DESCRIPTION, CITATION, vignettes were causing an error on CRAN checks! + # nullabor 0.3.10 - removed dependency on reshape2 diff --git a/cran-comments.md b/cran-comments.md index 22397a3..703933e 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,17 +1,17 @@ ## Overview -These are small changes, including removing some dependencies. Also fixed issues at https://cran.rstudio.com//web/checks/check_results_nullabor.html. +These are small changes, including removing some dependencies. Also fixed issues at https://cran.rstudio.com//web/checks/check_results_nullabor.html. And links flagged by CRAN check. -── R CMD check results ────────────────────── nullabor 0.3.10 ──── -Duration: 1m 24.9s +── R CMD check results ──────────── nullabor 0.3.12 ──── +Duration: 1m 2.3s 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ ## Test environment * R version 4.4.1 (2024-06-14) -- "Race for Your Life" -* https://win-builder.r-project.org/ -* Linux: +* https://win-builder.r-project.org/ A Note is produced that says URLs might be invalid. They have all been checked to be correct, and the correct URL, even though several exist. +* Linux, using R-hub v2. Has an error on compiling vignettes because the build machine doesn't have Rmarkdown. The vignettes build everywhere else. ## Reverse dependencies diff --git a/inst/CITATION b/inst/CITATION index 675a1cf..703d44e 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -1,26 +1,10 @@ -citHeader("To cite nullabor in publications use this:") - -citEntry(entry = "Article", - title = "Statistical Inference for Exploratory Data -Analysis and Model Diagnostics", - author = personList(as.person("Andreas Buja"), - as.person("Dianne Cook"), - as.person("Heike Hofmann"), - as.person("Michael Lawrence"), - as.person("Eun-kyung Lee"), - as.person("Deborah F. Swayne"), - as.person("Hadley Wickham")), - journal = "Royal Society Philosophical Transactions A", - year = "2009", - volume = "367", - number = "1906", - pages = "4361--4383", - url = "http://rsta.royalsocietypublishing.org/content/367/1906/4361.article-info", - - textVersion = - paste("Buja, A., Cook, D., Hofmann, H., Lawrence, M., Lee, E.-K., Swayne, -D. F, Wickham, H. (2009)", - "Statistical Inference for Exploratory Data Analysis and Model Diagnostics", - "Royal Society Philosophical Transactions A, 367(1906):4361-4383.", - "URL http://rsta.royalsocietypublishing.org/content/367/1906/4361.article-info") +bibentry(bibtype = "Article", + title = "Statistical Inference for Exploratory Data Analysis and Model Diagnostics", + author = "Andreas Buja, Dianne Cook, Heike Hofmann, Michael Lawrence, Eun-kyung Lee, Deborah F. Swayne, Hadley Wickham", + journal = "Royal Society Philosophical Transactions A", + year = "2009", + volume = "367", + number = "1906", + pages = "4361--4383", + doi = "10.1098/rsta.2009.0120" ) diff --git a/vignettes/distances.Rmd b/vignettes/distances.Rmd index 7cb6a58..fd8ccd5 100644 --- a/vignettes/distances.Rmd +++ b/vignettes/distances.Rmd @@ -160,4 +160,4 @@ References ---------- Roy Chowdhury, N. and Cook, D. and Hofmann, H. and Majumder, M. (2018) Measuring Lineup Difficulty By Matching Distance Metrics With Subject Choices in Crowd-Sourced Data, Journal of Computational and Graphical Statistics, 27(1), 132–145, -[https://doi.org/10.1080/10618600.2017.1356323](https://doi.org/10.1080/10618600.2017.1356323). +DOI: 10.1080/10618600.2017.1356323. diff --git a/vignettes/nullabor.Rmd b/vignettes/nullabor.Rmd index 14c99cf..a34c6ae 100644 --- a/vignettes/nullabor.Rmd +++ b/vignettes/nullabor.Rmd @@ -140,15 +140,15 @@ visual_power(turk_results) References ---------- -Buja, A., Cook, D., Hofmann, H., Lawrence, M., Lee, E.-K., Swayne, D. F, Wickham, H. (2009) Statistical Inference for Exploratory Data Analysis and Model Diagnostics, Royal Society Philosophical Transactions A, 367:4361--4383, [https://doi.org/10.1098/rsta.2009.0120](https://doi.org/10.1098/rsta.2009.0120). +Buja, A., Cook, D., Hofmann, H., Lawrence, M., Lee, E.-K., Swayne, D. F, Wickham, H. (2009) Statistical Inference for Exploratory Data Analysis and Model Diagnostics, Royal Society Philosophical Transactions A, 367:4361--4383, DOI: 10.1098/rsta.2009.0120. -Wickham, H., Cook, D., Hofmann, H. and Buja, A. (2010) Graphical Inference for Infovis, IEEE Transactions on Visualization and Computer Graphics, 16(6):973--979, [https://doi.ieeecomputersociety.org/10.1109/TVCG.2010.161](https://doi.ieeecomputersociety.org/10.1109/TVCG.2010.161). Best paper award. +Wickham, H., Cook, D., Hofmann, H. and Buja, A. (2010) Graphical Inference for Infovis, IEEE Transactions on Visualization and Computer Graphics, 16(6):973--979, Best paper award, DOI: 10.1109/TVCG.2010.161. -Hofmann, H., Follett, L., Majumder, M. and Cook, D. (2012) Graphical Tests for Power Comparison of Competing Designs, IEEE Transactions on Visualization and Computer Graphics, 18(12):2441--2448, [https://doi.ieeecomputersociety.org/10.1109/TVCG.2012.230](https://doi.ieeecomputersociety.org/10.1109/TVCG.2012.230). +Hofmann, H., Follett, L., Majumder, M. and Cook, D. (2012) Graphical Tests for Power Comparison of Competing Designs, IEEE Transactions on Visualization and Computer Graphics, 18(12):2441--2448, DOI: 10.1109/TVCG.2012.230. -Majumder, M., Hofmann, H. and Cook, D. (2013) Validation of Visual Statistical Inference, Applied to Linear Models, Journal of the American Statistical Association, 108(503):942--956. Featured Article [https://doi.org/10.1080/01621459.2013.808157](https://doi.org/10.1080/01621459.2013.808157). +Majumder, M., Hofmann, H. and Cook, D. (2013) Validation of Visual Statistical Inference, Applied to Linear Models, Journal of the American Statistical Association, 108(503):942--956, Featured Article, DOI: 10.1080/01621459.2013.808157. -Roy Chowdhury, N., Cook, D., Hofmann, H., Majumder, M., Lee, E. K., & Toth, A. L. (2014). Using visual statistical inference to better understand random class separations in high dimension, low sample size data. Computational Statistics, 30(2), 293-316. [https://doi.org/10.1007/s00180-014-0534-x](https://doi.org/10.1007/s00180-014-0534-x) +Roy Chowdhury, N., Cook, D., Hofmann, H., Majumder, M., Lee, E. K., & Toth, A. L. (2014). Using visual statistical inference to better understand random class separations in high dimension, low sample size data. Computational Statistics, 30(2), 293-316, DOI: 10.1007/s00180-014-0534-x. Majumder, M. and Hofmann, H. and Cook, D. (2014) Human Factors Influencing Visual Statistical Inference, -[https://doi.org/10.48550/arXiv.1408.1974](https://doi.org/10.48550/arXiv.1408.1974). +DOI: 10.48550/arXiv.1408.1974.