Fixing CT matrix in js when s/qforms are inconsistent (the coregistra…

…tion matrix in sform and original matrix in qform)

adhoc/yael.R

@@ -1,7 +1,7 @@
 # DIPSAUS DEBUG START
 n27_path <- "/Users/dipterix/Dropbox (PennNeurosurgery)/BeauchampLabAtPenn/Electrode_Localization_Paper/Code/N27"
 atlas_idx <- c(17,18,53,1021,1023,1027,1034,1035,2001,2005,2027)
-atlad_idx2 <- NULL #c(17,53,1001,1015,1030,2001,2015,2030)
+atlad_idx2 <- c(17,53,1001,1015,1030,2001,2015,2030)
 brain <- raveio::rave_brain("YAEL/N27", surfaces = atlad_idx2)
 
 electrodes <- brain$electrodes$raw_table
@@ -35,7 +35,13 @@ palettes = list(
   Response = ravebuiltins::get_heatmap_palette('PinkWhiteGreen')
 )
 brain$plot(
-  palettes = palettes
+  palettes = palettes,
+  controllers = list(
+    'Display Data' = "LabelPrefix",
+    'Subcortical Surface' = "right",
+    'Right Opacity' = 0.1,
+    'Voxel Type' = "aparc_aseg"
+  )
 )
 # B|D|H|
 

inst/threeBrainJS/dist/manifest.json

@@ -1,10 +1,4 @@
 {
   "main.js": "/threebrain.js",
-  "120.threebrain.js": "/120.threebrain.js",
-  "856.threebrain.js": "/856.threebrain.js",
-  "392.threebrain.js": "/392.threebrain.js",
-  "threebrain.js.map": "/threebrain.js.map",
-  "120.threebrain.js.map": "/120.threebrain.js.map",
-  "856.threebrain.js.map": "/856.threebrain.js.map",
-  "392.threebrain.js.map": "/392.threebrain.js.map"
+  "threebrain.js.map": "/threebrain.js.map"
 }

inst/threeBrainJS/dist/threebrain.js.LICENSE.txt

@@ -5,6 +5,29 @@
  * Licensed MIT © Zeno Rocha
  */
 
+/*!
+ * html2canvas 1.4.1 <https://html2canvas.hertzen.com>
+ * Copyright (c) 2022 Niklas von Hertzen <https://hertzen.com>
+ * Released under MIT License
+ */
+
+/*! *****************************************************************************
+    Copyright (c) Microsoft Corporation.
+
+    Permission to use, copy, modify, and/or distribute this software for any
+    purpose with or without fee is hereby granted.
+
+    THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
+    REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY
+    AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
+    INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM
+    LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR
+    OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+    PERFORMANCE OF THIS SOFTWARE.
+    ***************************************************************************** */
+
+/*! @license DOMPurify 2.4.3 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/2.4.3/LICENSE */
+
 /**
  * @license
   Copyright (c) 2008, Adobe Systems Incorporated