update scripts for supercomputer

experiments/exp2/runner/exp_tools.py

@@ -12,7 +12,7 @@
 DYN_PARAM_FNAME = "dynamic_models"
 METH_PARAM_FNAME = "inference_methods"
 FILE_PREFIX = "exp2"
-SAVE_DIR = Path(__file__).parents[0] # Path("/work/users/d/j/djpassey/interfere_exp1.1")
+SAVE_DIR = Path("/work/users/d/j/djpassey/interfere_exp2.0")
 
 def save_file_path(idx):
     return SAVE_DIR / Path(f"{FILE_PREFIX}_output{idx}.pkl")

experiments/exp2/runner/run.py

@@ -15,7 +15,7 @@
 OPT_ALL = False
 
 # Toggles a test run vs. a full run.
-IS_TEST_RUN = False
+IS_TEST_RUN = False 
 
 # Read the dynamic models param array and access at the command line arg index.
 # Read in the list of inference methods.

experiments/exp2/runner/single_slurm_job.sh

@@ -2,6 +2,6 @@
 
 module purge
 module load anaconda
-conda activate interfere
+conda activate interfere_exp2
 
 python /nas/longleaf/home/djpassey/interfere/experiments/exp2/runner/run.py $1

experiments/exp2/runner/slurm_submit.sh

@@ -2,10 +2,10 @@
 
 # Expected number of hours to run one simulation (always overestimate so that slurm doesnt kill the sim)
 HOURS_PER_SIM=48
-GIGS=32
+GIGS=16
 
 # Arguments for sbatch. Sets the appropriate time limit and directory
-FLAGS="--ntasks=1 --mem=${GIGS}G  --cpus-per-task=1 --time=$HOURS_PER_SIM:00:00 --chdir=$DATADIR"
+FLAGS="--ntasks=1 --mem=${GIGS}G  --cpus-per-task=1 --time=$HOURS_PER_SIM:00:00"
 # Total number of jobs
 NJOBS=$(python3 -c "import exp_tools as ex; ex.print_num_jobs()")
 for((n=0; n<$NJOBS; n+=1)); do
@@ -14,10 +14,10 @@ for((n=0; n<$NJOBS; n+=1)); do
 
     if [[ "$incomplete" == 'True' ]]; then
         # Submit the multiple parameter job script to the clusters
-        sbatch $FLAGS /nas/longleaf/home/djpassey/interfere/experiments/exp1/runner/single_slurm_job.sh $n
-        echo "Submitted exp_output$n.ipynb"
+        sbatch $FLAGS /nas/longleaf/home/djpassey/interfere/experiments/exp2/runner/single_slurm_job.sh $n
+        echo "Submitted exp2 - $n"
     else
-        echo "exp_output$n.ipynb is NOT SUBMITTED" 
+        echo "exp2 - $n is NOT SUBMITTED" 
     fi
 
 done