From af480153c5c2a5d726fd4d32d675f02969dea30d Mon Sep 17 00:00:00 2001 From: John Didion Date: Fri, 19 Aug 2022 09:02:06 -0700 Subject: [PATCH] Make it clear that `contig_sizes` can be a file with more than two columns (e.g. a faidx) --- indextools/console/partition.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/indextools/console/partition.py b/indextools/console/partition.py index d4a53ac..c197cbf 100644 --- a/indextools/console/partition.py +++ b/indextools/console/partition.py @@ -45,8 +45,8 @@ def partition( of volumes of child intervals). contig_sizes: A file with the sizes of all the contigs in the index; only necessary if the primary file is not specified, or if it does not - have sequence information in its header. This is a two-column tab-delimited - file ({contig_name}\t{contig_size}). + have sequence information in its header. This is a tab-delimited file + where the first two columns are ({contig_name}\t{contig_size}). regions: Regions to which the partitions are restricted. bgzip_outfile: Bgzip the output file. Set to False if 'outfile' is specified and it does not end with '.gz'.