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$ cat example.wdl
version 1.0
struct Message {
String text
Int priority
}
workflow my_workflow {
input {
String text
Int priority
}
Message alert = {
"text": text,
"priority": priority
}
}
$ wdltools check example.wdl
$ wdltools format example.wdl
[error] Command scallop failed
java.lang.Exception: Unrecognized type TypeIdentifier(Message)
at wdlTools.generators.code.WdlFormatter$DataType$.fromWdlType(WdlFormatter.scala:825)
at wdlTools.generators.code.WdlFormatter$DeclarationBase.<init>(WdlFormatter.scala:1231)
at wdlTools.generators.code.WdlFormatter$DeclarationStatement.<init>(WdlFormatter.scala:1250)
at wdlTools.generators.code.WdlFormatter$DeclarationStatement$.apply(WdlFormatter.scala:1249)
at wdlTools.generators.code.WdlFormatter$DeclarationStatement$.apply(WdlFormatter.scala:1249)
at scala.collection.immutable.Vector1.map(Vector.scala:1872)
at scala.collection.immutable.Vector1.map(Vector.scala:375)
at wdlTools.generators.code.WdlFormatter$DeclarationsSection.<init>(WdlFormatter.scala:1254)
at wdlTools.generators.code.WdlFormatter.wdlTools$generators$code$WdlFormatter$$splitWorkflowElements(WdlFormatter.scala:1498)
at wdlTools.generators.code.WdlFormatter$WorkflowSections.<init>(WdlFormatter.scala:1616)
at wdlTools.generators.code.WdlFormatter$WorkflowBlock.body(WdlFormatter.scala:1656)
at wdlTools.generators.code.WdlFormatter$BlockStatement.<init>(WdlFormatter.scala:1272)
at wdlTools.generators.code.WdlFormatter$WorkflowBlock.<init>(WdlFormatter.scala:1652)
at wdlTools.generators.code.WdlFormatter$DocumentSections.format(WdlFormatter.scala:1873)
at wdlTools.generators.code.WdlFormatter.formatElement(WdlFormatter.scala:1898)
at wdlTools.generators.code.WdlFormatter.formatDocument(WdlFormatter.scala:1907)
at wdlTools.generators.code.WdlFormatter.$anonfun$formatDocuments$1(WdlFormatter.scala:1914)
at wdlTools.syntax.WdlParser$Walker.addDocument$1(WdlParser.scala:66)
at wdlTools.syntax.WdlParser$Walker.walk(WdlParser.scala:80)
at wdlTools.generators.code.WdlFormatter.formatDocuments(WdlFormatter.scala:1913)
at wdlTools.cli.Format.apply(Format.scala:15)
at wdlTools.cli.Main$.runCommand(Main.scala:36)
at wdlTools.cli.Main$.delayedEndpoint$wdlTools$cli$Main$1(Main.scala:48)
at wdlTools.cli.Main$delayedInit$body.apply(Main.scala:12)
at scala.Function0.apply$mcV$sp(Function0.scala:39)
at scala.Function0.apply$mcV$sp$(Function0.scala:39)
at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:17)
at scala.App.$anonfun$main$1(App.scala:76)
at scala.App.$anonfun$main$1$adapted(App.scala:76)
at scala.collection.IterableOnceOps.foreach(IterableOnce.scala:563)
at scala.collection.IterableOnceOps.foreach$(IterableOnce.scala:561)
at scala.collection.AbstractIterable.foreach(Iterable.scala:926)
at scala.App.main(App.scala:76)
at scala.App.main$(App.scala:74)
at wdlTools.cli.Main$.main(Main.scala:12)
at wdlTools.cli.Main.main(Main.scala)
$
The text was updated successfully, but these errors were encountered:
Great tool, thank you ! However I ran into the same issue when trying to reformat some code - a fix would be much appreciated. I tried a few older versions, look like this never was implemented.
The text was updated successfully, but these errors were encountered: