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download script does not throw error for missing samples #1

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dpastling opened this issue Oct 12, 2016 · 0 comments
Open

download script does not throw error for missing samples #1

dpastling opened this issue Oct 12, 2016 · 0 comments
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the download script should generate an error if the sample is not found in the sequence index file

code/download_sample.pl BLAH data/1000Genomes_HiSeq.txt

When run from within the batch_bowtie2.sh script, the script continues onto the next step. An error would halt the script before running bowtie2
@dpastling dpastling added the bug label Oct 12, 2016
@dpastling dpastling self-assigned this Oct 12, 2016
dpastling pushed a commit that referenced this issue May 1, 2017
@IleaHeft
Merge pull request #1 from IleaHeft/IleaHeft-patch-1
dced805 
makes compatible with current version of bedtools
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