From 03e2d4dbdb425300e18adfb22089a9d00606c8ef Mon Sep 17 00:00:00 2001
From: Chris Pyatt <34276603+chrispyatt@users.noreply.github.com>
Date: Fri, 1 Sep 2023 12:49:52 +0100
Subject: [PATCH 1/3] up timeout to 3h & instance to mem2_ssd1_v2_x8

needed for S1 runs
---
 dxapp.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dxapp.json b/dxapp.json
index c57fdb5..c40d703 100644
--- a/dxapp.json
+++ b/dxapp.json
@@ -141,7 +141,7 @@
         "file": "src/GATK_gCNVcaller.sh",
         "timeoutPolicy": {
         "*": {
-            "hours": 2
+            "hours": 3
         }
         },
         "assetDepends": [
@@ -176,7 +176,7 @@
         "aws:eu-central-1": {
         "systemRequirements": {
             "*": {
-            "instanceType": "mem1_ssd1_v2_x8"
+            "instanceType": "mem2_ssd1_v2_x8"
             }
         }
         }

From 008cf3e289f6f35c311dfac1d3e745f51690242c Mon Sep 17 00:00:00 2001
From: Chris Pyatt <34276603+chrispyatt@users.noreply.github.com>
Date: Fri, 1 Sep 2023 12:51:01 +0100
Subject: [PATCH 2/3] Update app version

---
 dxapp.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dxapp.json b/dxapp.json
index c40d703..24f5864 100644
--- a/dxapp.json
+++ b/dxapp.json
@@ -3,7 +3,7 @@
     "title": "GATKgCNV_call",
     "summary": "GATK gCNV germline CNV caller",
     "dxapi": "1.0.0",
-    "version": "1.0.1",
+    "version": "1.1.1",
     "inputSpec": [
         {
         "name": "GATK_docker",

From cad61d33a748d1dfd248eba8e83dc40861e99f48 Mon Sep 17 00:00:00 2001
From: Chris Pyatt <34276603+chrispyatt@users.noreply.github.com>
Date: Fri, 1 Sep 2023 12:53:15 +0100
Subject: [PATCH 3/3] Update dxapp.json

---
 dxapp.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dxapp.json b/dxapp.json
index 24f5864..1bd3361 100644
--- a/dxapp.json
+++ b/dxapp.json
@@ -3,7 +3,7 @@
     "title": "GATKgCNV_call",
     "summary": "GATK gCNV germline CNV caller",
     "dxapi": "1.0.0",
-    "version": "1.1.1",
+    "version": "1.0.2",
     "inputSpec": [
         {
         "name": "GATK_docker",