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Adding power vignette plus a few other changes #605

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merged 24 commits into from
Dec 12, 2023

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pdwaggoner
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Overrides previous PR #604 to include other changes. Sorry for the confusion!

# Description

Adding a vignette on the value of statistical power as well as the role of `effectsize` in making this an easy thing to do via easystats#599 

# Proposed Changes

In addition to adding new vignette (`statistical_power.Rmd`), other changes include: 
- adding three new refs to `bibliography.bib`
- adding myself as ctb in `DESCRIPTION
- fixing a few typos here and there

# Question

**Note**: Need to change version number? Didn't think so with only the inclusion of a new vignette, but feel free to bump if needed.
updating bib for pwaggoner's new power vignette
adding pwaggoner
small typo and grammatical fixes
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codecov bot commented Sep 14, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (37b48bd) 90.74% compared to head (e7049b6) 90.55%.

❗ Current head e7049b6 differs from pull request most recent head eb0af9f. Consider uploading reports for the commit eb0af9f to get more accurate results

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #605      +/-   ##
==========================================
- Coverage   90.74%   90.55%   -0.19%     
==========================================
  Files          57       56       -1     
  Lines        3564     3419     -145     
==========================================
- Hits         3234     3096     -138     
+ Misses        330      323       -7     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@pdwaggoner
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All of these "fails" should be easy to override as the vignette successfully renders on my end. Let me know if something needs to be changed though. Thanks!

@pdwaggoner pdwaggoner requested review from DominiqueMakowski and removed request for mattansb September 15, 2023 14:06
pdwaggoner and others added 4 commits September 15, 2023 08:16
fixing some linting issues
Co-authored-by: Dominique Makowski <dom.mak19@gmail.com>
fixed warning issues
@pdwaggoner
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@IndrajeetPatil - Can you help out a little on this one? These checks keep failing, and I am not sure why. I've checked and updated obviously problematic spots. The changes I am making are pretty minimal. Any help would be appreciated!

@IndrajeetPatil
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@pdwaggoner R CMD check should be fixed now. You can take care of the lints.

@pdwaggoner
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pdwaggoner commented Sep 15, 2023

@IndrajeetPatil - Thank you so much for the quick help! Seems the other issues are with dependencies re: other easystats packages. Not sure about those. Other minor things @mattansb should be able to address. Thanks!

@pdwaggoner
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ping @DominiqueMakowski ? Not sure who is best to review here

@pdwaggoner pdwaggoner removed the request for review from mattansb September 19, 2023 15:40
@DominiqueMakowski
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@mattansb will be away till (at least) November 👶 maybe @bwiernik can help have a look :)

@bwiernik
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I will take a look in the next week or so. Please feel free to ping me if I'm slow 😀

@pdwaggoner
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Excellent, thanks @bwiernik! Latest round of checks is running now, but everything should be fixed and ready for your review whenever you're ready.

@pdwaggoner
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Excellent, thanks @mattansb ! Just added to _pkgdown.yml and requested your review on that PR (#613). Let me know what's next and/or feel free to merge both!

@pdwaggoner pdwaggoner mentioned this pull request Oct 4, 2023
@pdwaggoner
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@bwiernik or @mattansb, any thoughts here? Should be ready to merge. Let me know if anything else is needed from me. Thanks!

@DominiqueMakowski
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What about we add a disclaimer on top of this vignette "this vignette is work in progress, please make us a feedback about what features would you like to see in easystats to make power analysis easier", and then we merge, and Brenton will have a look when he can (and let's not bother Mat' at the moment unfortunately he has much more important stuff to worry about)

update per Dom's disclaimer suggestion
@pdwaggoner
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Great idea @DominiqueMakowski - and of course re: Mat! I hope he is safe and ok. I added the disclaimer per your suggestion in the latest edit. Feel free to merge as you're able. Thanks again.

@bwiernik
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Reading it over this morning. Thanks for your patience.

@pdwaggoner
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Absolutely and no worries. Not trying to bother but rather keep it from falling through the cracks. Thanks for any reviews/thoughts.

@mattansb
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Hey @pdwaggoner I still have a few open notes on my review - once you make those changes, I think this can be merged.

@pdwaggoner
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Thanks @mattansb ! but I can't see anything other than your suggestion to update the yml, which I did. Did I miss something? Can you point me to where you're referencing, and I will be happy to respond accordingly. Thanks

@mattansb
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Sure, just tagged you in them.

@pdwaggoner
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Sorry, just checked but still can't locate where your comments are. Is it possible we are looking at different version of the vignette? Feel free to share a direct link, due to my denseness.

@mattansb
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Weird... If I go to https://github.com/easystats/effectsize/pull/605/files in a desktop browser, I see all the comments. Does that work?

@pdwaggoner
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Ok, glad to know we are doing the same thing. Yes, I did just that and don't see any comments. So sorry! Feel free to make the changes directly, or you could just list them here in the conversation, and I can make them. Your call. Thanks again for the patience and help.

vignettes/statistical_power.Rmd Outdated Show resolved Hide resolved
vignettes/statistical_power.Rmd Outdated Show resolved Hide resolved
vignettes/statistical_power.Rmd Outdated Show resolved Hide resolved
@mattansb
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Okay, I think I messed up 😅
Do you see them now?

@pdwaggoner
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Ah there they are! I will make those changes right now. Thanks for that. Stand by for more

made changes responding to recent code review
@pdwaggoner
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Alright, @mattansb , all requested revisions have been responded to. Let me know what's next or if anything else is needed from me. Thanks again and I hope you're staying safe!

@pdwaggoner
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Just wondering if we can push this, given that all changes were made? Thanks @mattansb for any update on where we are with this one. Thanks!

@mattansb
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I made some changes (the use of pwr.t.test() in this example was not appropriate for the data at used in the example).

Once the tests pass, I'll merge.

Thanks @pdwaggoner !

@pdwaggoner
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Thanks @mattansb - looks like two tests are failing elsewhere, not in the vignette, unless I am misreading. Not sure if anything is needed from me or not on this...? Thanks!

@mattansb mattansb merged commit 250a9d2 into easystats:main Dec 12, 2023
24 of 26 checks passed
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Thanks again @pdwaggoner!

@pdwaggoner
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Absolutely! Thanks for the review and work @mattansb !

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5 participants