cv.tex

\documentclass[11pt,letterpaper,sans]{moderncv}
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\usepackage[scale=0.75,margin=.75in]{geometry}
\recomputelengths

\usepackage[T1]{fontenc}
\usepackage{lmodern}

\usepackage{datetime}
\usepackage{footmisc}
\usepackage{multibib}

% Creates sub-bibliographies
% For example, pr creates \citepr, \nocitepr, \bibliographystylepr, \bibliographypr
% \bibliographystylepr will create a \subsection{Peer Reviewed Journals}
% And so on.
\newcites{pr,conf,book,prep,post,talk,dev,mthd,code}{%
    Peer Reviewed Journals,%
    Conference Proceedings,%
    Books and Book Chapters,%
    Preprints,%
    Poster Presentations,%
    Invited Talks,%
    Developed and Maintained Software,%
    Published Methods,%
    Contributions to Open Source Scientific Software}

\makeatletter
\def\@biblabel#1{}
\renewcommand{\thefootnote}{\fnsymbol{footnote}}
\renewcommand*\bibliographyitemlabel{\@biblabel{\arabic{enumiv}}}
\renewcommand{\labelitemi}{$\bullet$}
\makeatother

\newdateformat{monthyeardate}{\monthname[\THEMONTH], \THEYEAR}

% \title{Curriculum Vitae}
\input{contact}

\begin{document}
\makecvtitle

\section{Education}
\cventry{2017}{PhD. Cognitive and Neural Systems}%
    {Boston University}{Boston, MA}{}%
    {\underline{Dissertation}: Multivariate pattern analysis of input and output
     representations of speech\\
     \underline{Advisor}: Jason W. Bohland}
\cventry{2009}{BS. Mathematics}{University of Tulsa}{Tulsa, OK}{}{}
\cventry{2009}{BCS. Computer Science}{University of Tulsa}{Tulsa, OK}{}{}

\section{Experience}
\cventry{2017 -- }{Software Developer}{Stanford University}{Stanford, CA}{}%
    {Center for Reproducible Neuroscience
\begin{itemize}
  \item fMRIPrep - developer
  \item FitLins - lead developer
  \item OpenNeuro - technical lead
  \item Brain Imaging Data Structure (BIDS) - maintainer, extension lead
\end{itemize}}
\cventry{2009 -- 2010}{Bioinformatics programmer}{University of Tulsa}%
    {Tulsa, OK}{}{InSilico Research Group: PySNPRank, PyGAIN, Bioinformatics format converters}
\cventry{2009 -- 2010}{Neuroinformatics intern}%
    {Laureate Institute for Brain Research}{Tulsa, OK}{}%
    {XNAT deployment, HIPAA compliance, Asset tracker}
%%%% Out of scope
%% \cventry{Summer 2008}{Intern}{True Digital Security}{Tulsa, OK}{}%
%%     {High bandwidth traffic shaping, Transparent emergency data destruction}
%% \cventry{Summer 2007}{Intern}{Meketrex Technologies, Inc.}{Tulsa, OK}{}%
%%     {Technical copywriting}

\section{Teaching}
\cventry{2019 -- }{Instructor}{Martinos Center for Biomedical Imaging - Functional MRI Workshop}{Boston}{MA}%
    {Lectures: ``fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data''\\
     ``BIDS: Brain Imaging Data Structure; Quality Assurance Issues''}
\cventry{2022}{Instructor}{Practice and Theory of Brain Imaging}{Online course}{}{}
\cventry{2020}{Instructor}{Neuro Data Science}{Montreal}{QC}{}
\cventry{2020}{Instructor}{Neurohackademy}{Online}{}{}
\cventry{2019}{Instructor}{Neurohackademy}{Seattle}{WA}{}
\cventry{2019}{Instructor}{Coastal Coding Workshop}{Miami}{FL}{}
\cventry{2017}{Instructor}{Hands-on Reproducible and Scalable Brain Imaging Analysis with Nipype}{Cambridge}{MA}{}
%%%% Out of scope
%% \cventry{2008 -- 2009}{Tutor}{University College Cork}{Cork}{Ireland}%
%%     {CS 4620/4621 Functional Programming. Professor: Joseph Manning}
%% \cventry{2007 -- 2008}{Teaching assistant}{University of Tulsa}{Tulsa}{OK}%
%%     {MATH 1083 Contemporary Mathematics. Professor: Janica Edmonds}

\section{Research funding}
\subsection{Active}
\cventry{2021 -- 2023}{Co-Investigator}{Strengthening Community and Code Foundations for Brain Imaging}%
    {CZI Essential Open Source Software}{}{}

\section{Professional societies}
\cvline{}{Organization for Human Brain Mapping}

\pagebreak

\section{Open source development\protect\footnotemark[1]}
\footnotetext[1]{Associated publications and additional contributions in \hyperref[Software]{Software section}}
\cventry{2019 -- }{Maintainer}{PyBIDS}{\href{https://bids-standard.github.io/pybids/}{bids-standard.github.io/pybids}}{}%
  {Python tools for querying and manipulating BIDS datasets}
\cventry{2018 -- }{Maintainer}{Pydra}{\href{https://nipype.github.io/pydra/}{nipype.github.io/pydra}}{}%
  {Dataflow engine that forms the core of the Nipype 2 ecosystem}
\cventry{2017 -- }{Author}{FitLins}{\href{https://fitlins.readthedocs.io}{fitlins.readthedocs.io}}{}%
  {Application for fitting linear models to BIDS datasets}
\cventry{2017 -- }{Maintainer}{fMRIPrep}{\href{https://fmriprep.org}{fmriprep.org}}{}%
  {A Robust Preprocessing Pipeline for fMRI Data}
\cventry{2017 -- }{Lead maintainer}{NiBabel}{\href{https://nipy.org/nibabel}{nipy.org/nibabel}}{}%
  {Python library for reading/writing a variety of neuroimaging formats}
\cventry{2017 -- }{Maintainer}{NiPype}{\href{https://nipype.readthedocs.io}{nipype.readthedocs.io}}{}%
  {Python library for building and executing neuroimaging workflows}
\cventry{2020 -- 2023}{Maintainer}{Versioneer}%
  {\href{https://github.com/python-versioneer/python-versioneer/}{github.com/python-versioneer/python-versioneer}}{}%
  {Python tool for integrating version control information in package metadata}

\section{Service/Leadership}
\cventry{2019 -- }{Maintainer}{The Brain Imaging Data Structure (BIDS)}{}{}{}
\cventry{2022}{Co-moderator}{Open Science Room Panel - ``Open Code: Myths Debunked''}%
  {Glasgow, UK}{}{}
\cventry{2019}{Co-moderator}{BIDS Computational Modeling Workshop}{Princeton, NJ}{}{}
\cventry{2017}{Co-organizer}{BrainHack Global 2017}{Cambridge, MA}{}{}
\cventry{2015}{Co-organizer}{7th Annual Inter-Science of Learning Conference}{La Jolla, CA}{}{}
% \cventry{2014 -- 2016}{Student member}{CompNet Outreach and Meeting Initiatives Committee}{Boston University}{}{}
% \cventry{2013 -- 2014}{President}{Computational Neuroscience Student Organization}{Boston University}{}{}
\cventry{2013}{Co-organizer}{5th Annual Inter-Science of Learning Conference}{Philadelphia, PA}{}{}

%%%% No longer a regular part of work
%% \section{Awards and Fellowships}
%% \cvline{2011 -- 2016}{Research Assistantship,
%%                       CELEST NSF Science of Learning Center}
%% \cvline{Nov. 2014}{CompNet Travel Award to Society for Neuroscience Conference}
%% \cvline{Nov. 2012}{CompNet Travel Award to Society for Neuroscience Conference}
%% \cvline{2010 -- 2011}{Dean's Fellowship for Graduate Study, Boston University}
%% \cvline{2005 -- 2009}{Presidential Scholarship, University of Tulsa}
%% \cvline{2006 -- 2008}{Tulsa Undergraduate Research Challenge Program,
%%                       University of Tulsa}
%% \cvline{2007}{Barry M. Goldwater Scholarship}

%% Update citations here. Order doesn't matter among or within groups.
\nocitepr{Markiewicz2016,Esteban2018,Yarkoni2019,Poldrack2019,Esteban2020a,Moreau2020,
	  Markiewicz2021,Dupre2021,Gau2021,Halchenko2021,Hanke2021,Goncalves2021,
	  Karakuzu2022,Ciric2022,Norgaard2022,Clement2022,Niso2022,
	  Bourget2022,Vega2022}
\nociteconf{Louthan2009,Roberts2010,Esteban2020b,pydra-proc-scipy-2020}
\nocitebook{%
  datalad-handbook%
}
\nociteprep{Esteban2019a,Bansal2021,Provins2022}
\nocitetalk{Johnson2013,Johnson2014,Markiewicz2016b,Markiewicz2017,
            Markiewicz2018software,
            Markiewicz2019a,Markiewicz2019b,Markiewicz2019c,Markiewicz2019d,
            Markiewicz2019e,Markiewicz2019f,
	    Markiewicz2020a,Markiewicz2020b,Markiewicz2020c,Markiewicz2020d,
	    Markiewicz2020e,
	    Markiewicz2021NICC,Markiewicz2022Brainhack}
\nocitepost{JohnsonYazdanbakhsh2012,JohnsonBohland2012,JohnsonBohland2014a,
            JohnsonBohland2014b,Markiewicz2015,Markiewicz2016a,Yarkoni2018,
            Markiewicz2018poster,Markiewicz2019poster,
	    Markiewicz2021poster,Esteban2021,Adon2021}
\nocitedev{
  nipy-nibabel,
  poldracklab-fitlins,
  nipy-nipype,
  nipype-pydra,
  fmriprep--a-robust-preprocessing-pipeline-for-functional-mri,
  nibabies--a-robust-preprocessing-pipeline-for-infant-functional-mri,
  mriqc--advancing-the-automatic-prediction-of-image-quality-in-mri-from-unseen-sites,
  pybids-python,
  nitransforms--a-python-tool-to-read--represent--manipulate--and-apply-n-dimensional-spatial-transforms,
  smriprep-structural,
  sdcflows--susceptibility-distortion-correction-workflows-,
  niworkflows-neuroimaging%
}
\nocitecode{
  bibsnet,
  datalad-next-extension,
  templateflow-client--accessing-the-library-of-standardized-neuroimaging-standard-spaces,
  duecredit-duecredit,
  bids-validator,
  datalad-datalad,
  me-ica-tedana,
  PyMVPA2_4_1,PySurfer0_9%  Not fetchable by API
}
\nocitemthd{
  philips-cdas-v0,
  formant-detection-scripts-for-mapping-the-cortical-representation-of-speech-sounds-in-a-syllable-repetition-task%
}

%% Boilerplate that creates the order between sub-bibliographies and
%% organizes into sections.
\section{Publications}
\bibliographystylepr{cvbib}
\bibliographypr{self}
\vspace{0.5em}
\bibliographystylebook{cvbib}
\bibliographybook{self,zenodo}
\vspace{0.5em}
\bibliographystyleconf{cvbib}
\bibliographyconf{self}
\vspace{0.5em}
\bibliographystyleprep{cvbib}
\bibliographyprep{self}
\section{Presentations}
\bibliographystyletalk{cvbib}
\bibliographytalk{self}
\footnotetext[2]{Presenter, when not first author}
\vspace{0.5em}
\bibliographystylepost{cvbib}
\bibliographypost{self}
\section{Software}\label{Software}
\bibliographystyledev{cvbib}
\bibliographydev{self,zenodo}
\vspace{0.5em}
\bibliographystylecode{cvbib}
\bibliographycode{self,zenodo}
\vspace{0.5em}
\bibliographystylemthd{cvbib}
\bibliographymthd{self,zenodo}

% \section{Additional Research Experience}
% \cventry{2005 -- 2008}{Undergraduate researcher}{University of Tulsa}%
%     {Tulsa, OK}{}%
%     {Operating systems security. Network traffic analysis. Advisor: John Hale}

% \section{Technical Expertise}
% \cvline{}{Data analysis, functional magnetic resonance imaging,
%     biological modeling, neural networks, neuroinformatics,
%     digital signal processing, speech analysis, pattern recognition,
%     software engineering, computer security, system administration,
%     database management.}
% \subsection{Technologies}
% \cvline{Scientific}{
%     FreeSurfer/FsFast, FSL, AFNI,   % fMRI
%     NiPype, PyMVPA,                 % fMRI/Python
%     scikit-learn, PsychoPy,         % Scientific Python
%     PRAAT}                          % Miscellaneous
% \cvline{Cluster computing}{SLURM, Load Sharing Facility (LSF),
%                            Oracle/Sun Grid Engine (SGE),
%                            Andrew File System (AFS)}
% %% \cvline{Web}{HTML/CSS, JavaScript, JQuery, Python/Django, Perl/CGI, PHP, WSGI}
% \cvline{Version control}{git (GitHub, git-annex), subversion, CVS}
% %\cvline{Administration}{nginx, Apache, GitLab, gitolite/git-annex}
% 
% \subsection{Programming Languages}
% \cvline{Proficient}{Python 2/3, MATLAB, C, Perl, Shell}
% \cvline{Competent}{Haskell, \LaTeX, Java, Mathematica}
% \cvline{Familiar}{R, JavaScript, PHP, Common LISP}

\vspace{24pt}
\center{Updated: \monthyeardate\today}

\end{document}