packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2024},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 0.41},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-devtools,
  title = {devtools: Tools to Make Developing R Packages Easier},
  author = {Hadley Wickham and Jim Hester and Winston Chang and Jennifer Bryan},
  year = {2022},
  note = {R package version 2.4.5},
  url = {https://devtools.r-lib.org/},
}

@Manual{R-FLa4a,
  title = {FLa4a: A Simple and Robust Statistical Catch at Age Model},
  author = {Colin P. Millar and Ernesto Jardim},
  note = {R package version 1.9.0},
  year = {2024},
}

@Manual{R-FLCore,
  title = {FLCore: Core Package of FLR, Fisheries Modelling in R},
  author = {Laurence T. Kell and Philippe Grosjean},
  note = {R package version 2.6.20.920},
  url = {http://flr-project.org/FLCore},
  year = {2024},
}

@Manual{R-formatR,
  title = {formatR: Format R Code Automatically},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 1.14},
  url = {https://github.com/yihui/formatR},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
  year = {2024},
  note = {R package version 3.5.1},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-ggplotFL,
  title = {ggplotFL: Using ggplot2 in FLR},
  author = {Iago Mosqueira and Laurence T. Kell},
  year = {2024},
  note = {R package version 2.7.0.9133},
  url = {http://flr-project.org/ggplotFL},
}

@Manual{R-iterators,
  title = {iterators: Provides Iterator Construct},
  author = {Revolution Analytics and Steve Weston},
  year = {2022},
  note = {R package version 1.0.14},
  url = {https://github.com/RevolutionAnalytics/iterators},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 1.48},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2024},
  note = {R package version 0.22-6},
  url = {https://lattice.r-forge.r-project.org/},
}

@Manual{R-reshape2,
  title = {reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 1.4.4},
  url = {https://github.com/hadley/reshape},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2024},
  note = {R package version 2.28},
  url = {https://github.com/rstudio/rmarkdown},
}

@Manual{R-triangle,
  title = {triangle: Distribution Functions and Parameter Estimates for the Triangle
Distribution},
  author = {Rob Carnell},
  year = {2022},
  note = {R package version 1.0},
  url = {https://bertcarnell.github.io/triangle/},
}

@Manual{R-usethis,
  title = {usethis: Automate Package and Project Setup},
  author = {Hadley Wickham and Jennifer Bryan and Malcolm Barrett and Andy Teucher},
  year = {2024},
  note = {R package version 3.0.0},
  url = {https://usethis.r-lib.org},
}

@Manual{R-XML,
  title = {XML: Tools for Parsing and Generating XML Within R and S-Plus},
  author = {Duncan {Temple Lang}},
  year = {2024},
  note = {R package version 3.99-0.17},
  url = {https://www.omegahat.net/RSXML/},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  isbn = {978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Article{FLa4a2015,
  title = {What if stock assessment is as simple as a linear model? The a4a initiative},
  journal = {ICES Journal of Marine Science},
  volume = {72},
  number = {1},
  pages = {232–236},
  year = {2015},
  author = {Ernesto Jardim and Colin P. Millar and Iago Mosqueira and Finlay Scott and G. Chato Osio and Marco Ferretti and Nekane Alzorriz and Alessandro Orio},
}

@Article{FLCore2007,
  title = {FLR: an open-source framework for the evaluation and development of management strategies},
  author = {L.T. Kell and I. Mosqueira and P. Grosjean and J-M. Fromentin and D. Garcia and R. Hillary and E. Jardim and S. Mardle and M.A. Pastoors and J.J. Poos and F. Scott and R.D. Scott},
  journal = {ICES Journal of Marine Science},
  year = {2007},
  volume = {64},
  pages = {640-646},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  year = {2008},
  publisher = {Springer},
  address = {New York},
  isbn = {978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Article{reshape22007,
  title = {Reshaping Data with the {reshape} Package},
  author = {Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2007},
  volume = {21},
  number = {12},
  pages = {1--20},
  url = {http://www.jstatsoft.org/v21/i12/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}