build_and_test_on_push.yml

on: [ push, pull_request ]

name: build and test

jobs:
  build_and_test:
    runs-on: ubuntu-20.04
    strategy:
      matrix:
        include:
          - os: ubuntu-latest
            arch: x86_64
          - os: ubuntu-latest
            arch: aarch64
    steps:
      - uses: actions/checkout@v3
        with: 
          submodules: 'recursive'
      - name: Install required packages
        if: matrix.os == 'ubuntu-latest' && matrix.arch == 'x86_64'
        run: sudo apt-get update && sudo apt-get install -y
          git
          bash
          cmake
          make
          g++
          libatomic-ops-dev
          autoconf
          libgsl-dev
          zlib1g-dev
          libzstd-dev
          libjemalloc-dev
      - name: Build seqwish for Linux x86_64
        if: matrix.os == 'ubuntu-latest' && matrix.arch == 'x86_64'
        run: cmake -H. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_C_FLAGS="-mcx16" -DCMAKE_CXX_FLAGS="-mcx16" -Bbuild && cmake --build build -- -j 2
      - name: Execute tests for Linux x86_64
        if: matrix.os == 'ubuntu-latest' && matrix.arch == 'x86_64'
        run: cd test && ASAN_OPTIONS=detect_leaks=1:symbolize=1 LSAN_OPTIONS=verbosity=0:log_threads=1 make test

      - name: Build and test seqwish for Linux ${{ matrix.arch }}
        if: matrix.os == 'ubuntu-latest' && matrix.arch != 'x86_64'
        uses: uraimo/run-on-arch-action@v2
        with:
          arch: ${{ matrix.arch }}
          distro: ubuntu20.04
          githubToken: ${{ github.token }}
          dockerRunArgs: |
            --volume "${PWD}:/seqwish" 
          install: |
            apt-get update -q -y
            apt-get install -q -y \
              cmake \
              make \
              g++ \
              git \
              file \
              libatomic-ops-dev \
              autoconf \
              libgsl-dev \
              zlib1g-dev \
              libzstd-dev \
              libjemalloc-dev
          run: |
            cd /seqwish
            cmake -H. -DCMAKE_BUILD_TYPE=Release -DEXTRA_FLAGS="-march=armv8-a" -Bbuild && cmake --build build -- -j 2
            file bin/seqwish 
            cd test && make test