Dockerfile

# creates an image containing an installed instance of seqwish

# load base image
FROM ubuntu:18.04

# update system
RUN apt-get update > /dev/null

# install dependencies
RUN apt-get -qqy install zlib1g zlib1g-dev libomp-dev

# install build tools
RUN apt-get -qqy install build-essential software-properties-common && \
    add-apt-repository -y ppa:ubuntu-toolchain-r/test && \
    apt-get update > /dev/null && \
    apt-get -qqy install gcc-snapshot && \
    apt-get update > /dev/null && \
    apt-get -qqy install gcc-8 g++-8 && \
    update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-8 80 --slave /usr/bin/g++ g++ /usr/bin/g++-8 && \
    apt-get -qqy install cmake git

# copy over current directory to container
ADD . /seqwish

# set working directory
WORKDIR /seqwish

# build
RUN cmake -H. -Bbuild && cmake --build build -- -j3

# cleanup
RUN apt-get -qy autoremove

# add seqwish to the PATH
ENV PATH /seqwish/bin:$PATH