Issue with predict.py and resampling scans back into the original space.

[ellisdg]

I am running into an issue with the BONBID 2023 data where the predictions from predict.py are not resampled correctly back into the original space. I have tried a lot of different things with no success. I don't know if this is an issue with MONAI's resampling or if there is a bug in 3DUnetCNN that I can't seem to find.

[ellisdg]

Maybe the issue is aligning the corners. The following visualization is helpful for seeing how align_corners works:
https://discuss.pytorch.org/t/what-we-should-use-align-corners-false/22663/9

[stale]

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