v0.7.2

What's Changed

• Updated list of IRIs to ignore when checking prefLabel by @jesper-friis in #731
• Add --copy-annotation option to ontoconvert by @jesper-friis in #732
• Added additional recognised prefixes by @jesper-friis in #734
• Copy EMMO annotations by @jesper-friis in #733
• Load doamin-battery instead of battinfo which is just an extra wrapping by @francescalb in #745
• Added possibility for = in extra annotations defined in excelparser by @francescalb in #752
• Make it possible to run HermiT on EMMO by @jesper-friis in #740
• Added minor fixes for ontoconvert by @jesper-friis in #739
• Fixed failing test_save in master by @jesper-friis in #756
• Rewriting ontodoc based on domain-battery by @jesper-friis in #742
• Added test for descriptions by @jesper-friis in #766
• Added release_pat secret to ci_cd_updated_master workflow by @francescalb in #777
• Updated to owlready2==0.44 by @francescalb in #780
• Flb/trusted publisher on pypi by @francescalb in #791
• Corrected publishing info by @francescalb in #792

Full Changelog: v0.7.1...v0.7.2

Changelog

v0.7.2 (2024-10-25)

Full Changelog

Closed issues:

• excelparser, allow for = in strings for other annotations. #751
• Add options to ontoconvert for adding annotations expected by FOOPS #728
• Remove or rename "old" version tags #547
• Handle old EMMO Python package version tags #272

Merged pull requests:

• Corrected publishing info #792 (@francescalb)
• Flb/trusted publisher on pypi #791 (@francescalb)
• Updated to owlready2==0.44 #780 (@francescalb)
• Added release_pat secret to ci_cd_updated_master workflow #777 (@francescalb)
• Added test for descriptions #766 (@jesper-friis)
• Fixed failing test_save in master #756 (@jesper-friis)
• Added possibility for = in extra annotations defined in excelparser #752 (@francescalb)
• Load doamin-battery instead of battinfo which is just an extra wrapping #745 (@francescalb)
• Rewriting ontodoc based on domain-battery #742 (@jesper-friis)
• Make it possible to run HermiT on EMMO #740 (@jesper-friis)
• Added minor fixes for ontoconvert #739 (@jesper-friis)
• Added additional recognised prefixes #734 (@jesper-friis)
• Copy EMMO annotations #733 (@jesper-friis)
• Add --copy-annotation option to ontoconvert #732 (@jesper-friis)
• Updated list of IRIs to ignore when checking prefLabel #731 (@jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.7.1

What's Changed

• Updated ontoconvert help by @jesper-friis in #715
• Added yield from by @jesper-friis in #720
• Correct saving squashed ontology by @jesper-friis in #719

Full Changelog: v0.7.0...v0.7.1

Changelog

v0.7.1 (2024-02-29)

Full Changelog

v0.7.0.1 (2024-02-29)

Full Changelog

Closed issues:

• Implement ontoconvert --base-iri argument #716

Merged pull requests:

• Added yield from #720 (@jesper-friis)
• Correct saving squashed ontology #719 (@jesper-friis)
• Updated ontoconvert help #715 (@jesper-friis)

v0.7.0 (2024-01-26)

Full Changelog

Merged pull requests:

• Ontology copy #711 (@francescalb)
• Update save recursive and layout #710 (@francescalb)

v0.6.3 (2024-01-25)

Full Changelog

Merged pull requests:

• Fix infinite recursion in directory layout #708 (@jesper-friis)
• Ensure that saving with squash removes all but current ontology #707 (@jesper-friis)
• Turned on directory layout tests for emmo and made them pytest #706 (@francescalb)

v0.6.2 (2024-01-23)

Full Changelog

Merged pull requests:

• Allow controling ontology IRI when saving #700 (@jesper-friis)

v0.6.1 (2024-01-18)

Full Changelog

Closed issues:

• No tests for ontology.save #684
• Allow using HermiT from ontoconvert #664
• PrefLabel used by new_entity, and get_by_label even if it is not in the ontology #642
• ontology(imported=True) returns all classes in world #640
• excel2onto example doesn't come into the github pages documentation #626
• owlready2 > 0.41 fails #624
• get_by_label and get_by_label all force add label_annotations #621
• hasPhysicalDimension convention has changed in EMMO-1.0.0-beta3 #347

Merged pull requests:

• Avoid infinite recursion in set_common_prefix() #701 (@jesper-friis)
• Updated the getattr patch #699 (@jesper-friis)
• WIP: Fix issues with changed IRIs effecting test_excelparser #697 (@jesper-friis)
• Added directory_layout() function #696 (@jesper-friis)
• Added redirection checking tool #695 (@jesper-friis)
• Add test save #686 (@francescalb)
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 #678 (@jesper-friis)
• Skip checking dimensional units for domain ontologies that doesn't load this class. #677 (@jesper-friis)
• HermiT is default reasoner. #671 (@francescalb)
• Ci/dependabot updates #662 (@francescalb)
• Updated emmocheck to new EMMO quantities and units #658 (@jesper-friis)
• Update README.md #657 (@jesper-friis)
• Corrected bug so that asking for entities in imported does not return all in world #655 (@francescalb)
• Corrected get_by_label to use only labels in the ontology #643 (@francescalb)
• Update to comply with owlready2>0.41 #639 (@francescalb)
• Ontodoc example in documentation #630 (@francescalb)

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format fr...

v0.7.0

What's Changed

• Update save recursive and layout by @francescalb in #710
• Ontology.copy() was added by @francescalb in #711

Full Changelog: v0.6.3...v0.7.0

Changelog

v0.7.0 (2024-01-26)

Full Changelog

Merged pull requests:

• Ontology copy #711 (@francescalb)
• Update save recursive and layout #710 (@francescalb)

v0.6.3 (2024-01-25)

Full Changelog

Merged pull requests:

• Fix infinite recursion in directory layout #708 (@jesper-friis)
• Ensure that saving with squash removes all but current ontology #707 (@jesper-friis)
• Turned on directory layout tests for emmo and made them pytest #706 (@francescalb)

v0.6.2 (2024-01-23)

Full Changelog

Merged pull requests:

• Allow controling ontology IRI when saving #700 (@jesper-friis)

v0.6.1 (2024-01-18)

Full Changelog

Closed issues:

• No tests for ontology.save #684
• Allow using HermiT from ontoconvert #664
• PrefLabel used by new_entity, and get_by_label even if it is not in the ontology #642
• ontology(imported=True) returns all classes in world #640
• excel2onto example doesn't come into the github pages documentation #626
• owlready2 > 0.41 fails #624
• get_by_label and get_by_label all force add label_annotations #621
• hasPhysicalDimension convention has changed in EMMO-1.0.0-beta3 #347

Merged pull requests:

• Avoid infinite recursion in set_common_prefix() #701 (@jesper-friis)
• Updated the getattr patch #699 (@jesper-friis)
• WIP: Fix issues with changed IRIs effecting test_excelparser #697 (@jesper-friis)
• Added directory_layout() function #696 (@jesper-friis)
• Added redirection checking tool #695 (@jesper-friis)
• Add test save #686 (@francescalb)
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 #678 (@jesper-friis)
• Skip checking dimensional units for domain ontologies that doesn't load this class. #677 (@jesper-friis)
• HermiT is default reasoner. #671 (@francescalb)
• Ci/dependabot updates #662 (@francescalb)
• Updated emmocheck to new EMMO quantities and units #658 (@jesper-friis)
• Update README.md #657 (@jesper-friis)
• Corrected bug so that asking for entities in imported does not return all in world #655 (@francescalb)
• Corrected get_by_label to use only labels in the ontology #643 (@francescalb)
• Update to comply with owlready2>0.41 #639 (@francescalb)
• Ontodoc example in documentation #630 (@francescalb)

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@jesper-friis)
• Added link to excelparser from tools for documentation of excel sheet. #594 (@francescalb)
• Bump SINTEF/ci-c...

v0.6.3

What's Changed

• Turned on directory layout tests for emmo and made them pytest by @francescalb in #706
• Ensure that saving with squash removes all but current ontology by @jesper-friis in #707
• Fix infinite recursion in directory layout by @jesper-friis in #708

Full Changelog: v0.6.2...v0.6.3

Changelog

v0.6.3 (2024-01-25)

Full Changelog

Merged pull requests:

• Fix infinite recursion in directory layout #708 (@jesper-friis)
• Ensure that saving with squash removes all but current ontology #707 (@jesper-friis)
• Turned on directory layout tests for emmo and made them pytest #706 (@francescalb)

v0.6.2 (2024-01-23)

Full Changelog

Merged pull requests:

• Allow controling ontology IRI when saving #700 (@jesper-friis)

v0.6.1 (2024-01-18)

Full Changelog

Closed issues:

• No tests for ontology.save #684
• Allow using HermiT from ontoconvert #664
• PrefLabel used by new_entity, and get_by_label even if it is not in the ontology #642
• ontology(imported=True) returns all classes in world #640
• excel2onto example doesn't come into the github pages documentation #626
• owlready2 > 0.41 fails #624
• get_by_label and get_by_label all force add label_annotations #621
• hasPhysicalDimension convention has changed in EMMO-1.0.0-beta3 #347

Merged pull requests:

• Avoid infinite recursion in set_common_prefix() #701 (@jesper-friis)
• Updated the getattr patch #699 (@jesper-friis)
• WIP: Fix issues with changed IRIs effecting test_excelparser #697 (@jesper-friis)
• Added directory_layout() function #696 (@jesper-friis)
• Added redirection checking tool #695 (@jesper-friis)
• Add test save #686 (@francescalb)
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 #678 (@jesper-friis)
• Skip checking dimensional units for domain ontologies that doesn't load this class. #677 (@jesper-friis)
• HermiT is default reasoner. #671 (@francescalb)
• Ci/dependabot updates #662 (@francescalb)
• Updated emmocheck to new EMMO quantities and units #658 (@jesper-friis)
• Update README.md #657 (@jesper-friis)
• Corrected bug so that asking for entities in imported does not return all in world #655 (@francescalb)
• Corrected get_by_label to use only labels in the ontology #643 (@francescalb)
• Update to comply with owlready2>0.41 #639 (@francescalb)
• Ontodoc example in documentation #630 (@francescalb)

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@jesper-friis)
• Added link to excelparser from tools for documentation of excel sheet. #594 (@francescalb)
• Bump SINTEF/ci-cd from 2.3.0 to 2.3.1 #584 (@dependabot[bot])
• Updated get_by_label() so that it now accepts label, name and full iri [#582](https://github.co...

v0.6.2

What's Changed

• Allow controling ontology IRI when saving by @jesper-friis in #700

Full Changelog: v0.6.1...v0.6.2

Changelog

v0.6.2 (2024-01-23)

Full Changelog

Merged pull requests:

• Allow controling ontology IRI when saving #700 (@jesper-friis)

v0.6.1 (2024-01-18)

Full Changelog

Closed issues:

• No tests for ontology.save #684
• Allow using HermiT from ontoconvert #664
• PrefLabel used by new_entity, and get_by_label even if it is not in the ontology #642
• ontology(imported=True) returns all classes in world #640
• excel2onto example doesn't come into the github pages documentation #626
• owlready2 > 0.41 fails #624
• get_by_label and get_by_label all force add label_annotations #621
• hasPhysicalDimension convention has changed in EMMO-1.0.0-beta3 #347

Merged pull requests:

• Avoid infinite recursion in set_common_prefix() #701 (@jesper-friis)
• Updated the getattr patch #699 (@jesper-friis)
• WIP: Fix issues with changed IRIs effecting test_excelparser #697 (@jesper-friis)
• Added directory_layout() function #696 (@jesper-friis)
• Added redirection checking tool #695 (@jesper-friis)
• Add test save #686 (@francescalb)
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 #678 (@jesper-friis)
• Skip checking dimensional units for domain ontologies that doesn't load this class. #677 (@jesper-friis)
• HermiT is default reasoner. #671 (@francescalb)
• Ci/dependabot updates #662 (@francescalb)
• Updated emmocheck to new EMMO quantities and units #658 (@jesper-friis)
• Update README.md #657 (@jesper-friis)
• Corrected bug so that asking for entities in imported does not return all in world #655 (@francescalb)
• Corrected get_by_label to use only labels in the ontology #643 (@francescalb)
• Update to comply with owlready2>0.41 #639 (@francescalb)
• Ontodoc example in documentation #630 (@francescalb)

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@jesper-friis)
• Added link to excelparser from tools for documentation of excel sheet. #594 (@francescalb)
• Bump SINTEF/ci-cd from 2.3.0 to 2.3.1 #584 (@dependabot[bot])
• Updated get_by_label() so that it now accepts label, name and full iri #582 (@jesper-friis)
• Added two additional exceptions to emmocheck #577 (@jesper-friis)
• Bump SINTEF/ci-cd from 2.2.1 to 2.3.0 #575 (@dependabot[bot])
• get_ancestors and get_descendants have the same arguments. #572 (@francescalb)
• Bump SINTEF/ci-cd from 2.2.0 to 2.2.1 #571 (@dependabot[bot])
• ontograph: colour updates, examples, bugfix #569 (@francescalb)
• Bump SINTEF/ci-cd from 2.1.0 to 2.2.0 #567 (@dependabot[bot])
• Changed argument leafs to leaves, with deprecation warning in ontograph [#564](...

v0.6.1

What's Changed

• Ontodoc example in documentation by @francescalb in #630
• Corrected get_by_label to use only labels in the ontology by @francescalb in #643
• Corrected bug so that asking for entities in imported does not return all in world by @francescalb in #655
• Updated emmocheck to new EMMO quantities and units by @jesper-friis in #658
• Update to comply with owlready2>0.41 by @francescalb in #639
• HermiT is default reasoner. by @francescalb in #671
• Skip checking dimensional units for domain ontologies that doesn't load this class. by @jesper-friis in #677
• Add test save by @francescalb in #686
• Added redirection checking tool by @jesper-friis in #695
• WIP: Fix issues with changed IRIs effecting test_excelparser by @jesper-friis in #697
• Added directory_layout() function by @jesper-friis in #696
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 by @jesper-friis in #678
• Avoid infinite recursion in set_common_prefix() by @jesper-friis in #701
• Updated the getattr patch by @jesper-friis in #699

Full Changelog: v0.6.0...v0.6.1

Changelog

v0.6.1 (2024-01-18)

Full Changelog

Closed issues:

• No tests for ontology.save #684
• Allow using HermiT from ontoconvert #664
• PrefLabel used by new_entity, and get_by_label even if it is not in the ontology #642
• ontology(imported=True) returns all classes in world #640
• excel2onto example doesn't come into the github pages documentation #626
• owlready2 > 0.41 fails #624
• get_by_label and get_by_label all force add label_annotations #621
• hasPhysicalDimension convention has changed in EMMO-1.0.0-beta3 #347

Merged pull requests:

• Avoid infinite recursion in set_common_prefix() #701 (@jesper-friis)
• Updated the getattr patch #699 (@jesper-friis)
• WIP: Fix issues with changed IRIs effecting test_excelparser #697 (@jesper-friis)
• Added directory_layout() function #696 (@jesper-friis)
• Added redirection checking tool #695 (@jesper-friis)
• Add test save #686 (@francescalb)
• Update test_unit_dimension in emmocheck to EMMO 1.0.0-beta5 #678 (@jesper-friis)
• Skip checking dimensional units for domain ontologies that doesn't load this class. #677 (@jesper-friis)
• HermiT is default reasoner. #671 (@francescalb)
• Ci/dependabot updates #662 (@francescalb)
• Updated emmocheck to new EMMO quantities and units #658 (@jesper-friis)
• Update README.md #657 (@jesper-friis)
• Corrected bug so that asking for entities in imported does not return all in world #655 (@francescalb)
• Corrected get_by_label to use only labels in the ontology #643 (@francescalb)
• Update to comply with owlready2>0.41 #639 (@francescalb)
• Ontodoc example in documentation #630 (@francescalb)

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@Jesper-fr...

v0.6.0

Corrected emmocheck

What's Changed

• prefLabel now only tested on current ontlogy unless check-imported is True.

Changelog

v0.6.0 (2023-06-19)

Full Changelog

Closed issues:

• pyparsing has been updated #629

Merged pull requests:

• Check prefLabels in imported ontologies only if asked for. #628 (@francescalb)

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3.1 (2023-06-12)

Full Changelog

v0.5.3 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@jesper-friis)
• Added link to excelparser from tools for documentation of excel sheet. #594 (@francescalb)
• Bump SINTEF/ci-cd from 2.3.0 to 2.3.1 #584 (@dependabot[bot])
• Updated get_by_label() so that it now accepts label, name and full iri #582 (@jesper-friis)
• Added two additional exceptions to emmocheck #577 (@jesper-friis)
• Bump SINTEF/ci-cd from 2.2.1 to 2.3.0 #575 (@dependabot[bot])
• get_ancestors and get_descendants have the same arguments. #572 (@francescalb)
• Bump SINTEF/ci-cd from 2.2.0 to 2.2.1 #571 (@dependabot[bot])
• ontograph: colour updates, examples, bugfix #569 (@francescalb)
• Bump SINTEF/ci-cd from 2.1.0 to 2.2.0 #567 (@dependabot[bot])
• Changed argument leafs to leaves, with deprecation warning in ontograph #564 (@francescalb)
• Corrected bug on getting default relation style. #561 (@francescalb)
• Fix internal links in generated documentation generated with ontodoc #548 (@jesper-friis)

v0.5.1 (2023-02-07)

Full Changelog

Fixed bugs:

• Use custom token for GitHub changelog generator #545
• Avoid using Azure mirror for APT packages #541

Merged pull requests:

• Use SINTEF/ci-cd v2.1.0 in CI/CD workflows #546 (@CasperWA)
• Revert version to v0.5.0 #544 (@CasperWA)
• Fix ontodoc for bigmap #543 (@jesper-friis)

v0.5.0 (2023-02-06)

Full Changelog

Fixed bugs:

• LegacyVersion does not exist in packaging.version #540
• ontodoc: Expect is_instance_of property to be iterable #506
• Reinstate images/material.png #495

Closed issues:

• Newest pylint (2.15.4) has intriduced some new rules. #534
• sync_attributes according to emmo convention regenerates a new iri even if it already has a valid one #525
• Remove dependency on LegacyVersion of packaging #514
• pytests are importing packaging 22.0 even though it is not allowed in requirements #513
• ontodoc: adding annotations that are not strings fail #510
• get_by_label_all only works after sync_attributes #502
• excel2onto: support updating ontology #501
• excel2onto: allow to use prefLabel already in imported ontologies #500
• Drop Python 3.6 support - extend Python >3.7 support #486
• Update pypi-release github action #482
• Make workflows dispatchable #481
• excel2onto: Read catalog file for imported ontology #474
• Give option to write_catalog for writing relative paths #473
• excel2onto: add choice of prefix for imported ontologies #467

Merged pull requests:

• Fix fixtures for Python3.7 #536 (@CasperWA)
• Flb/fix to pylint2.15.4 [#535](https://github.com/emmo-repo/EMMOnt...

v0.5.4

Just updating version number this is equivalent to v.0.5.3 with a fix on CD-workflows

Changelog

v0.5.4 (2023-06-15)

Full Changelog

v0.5.3.2 (2023-06-15)

Full Changelog

Merged pull requests:

• remove warnings_as_errors in cd workflow introduced in 0.5.3 #625 (@francescalb)

v0.5.3 (2023-06-12)

Full Changelog

v0.5.3.1 (2023-06-12)

Full Changelog

Closed issues:

• Extend new_entity to include properties #609
• Add support for Python 3.11 #599
• excelparser - enable object properties creation #587
• If there are altLabels that match, get_by_label_all returns only the prefLabels. #511
• excel2onto: implement other annotations #462

Merged pull requests:

• default_annotations no longer forced in get_by_label #623 (@francescalb)
• Updated documentation and excel sheet in example. #622 (@francescalb)
• Flb/excel2onto properties #620 (@francescalb)
• Fixed failing tests in test_patch.py #618 (@jesper-friis)
• Add test for Python 3.11 and support it officially #615 (@jesper-friis)
• Added doctest #614 (@jesper-friis)
• Item access to classes #613 (@jesper-friis)
• Change ontology.new_entity to also allow adding properties #610 (@francescalb)
• Added DOI badge #606 (@jesper-friis)

v0.5.2 (2023-05-24)

Full Changelog

Fixed bugs:

• Auto-merge dependabot PRs workflow invalid #566

Closed issues:

• Point to excelparser api from the tools-page #593
• BUG: pytest - missing remote file /0.5.0/electrochemicalquantities / ontology #589
• Owlready 0.41 support ? #588
• Allow space in labels #583
• is_defined needs a better description #563
• utils line 112 in get_iri_name link = "{lowerlabel}" vs "{label}" #562
• ontograph - update colour deafults #559
• ontograph - argument leafs should be leaves #558
• ontograph - write out more examples on how to use it #557
• ontograph --parents not working #556
• test_graph2 is failing #555
• Add client side redirection in generated html documentation #552
• Typos in PR template #523
• ontograph, read format from name #497
• Harmonize get_descendants and get_ancestors #406
• Review default colours and style in ontopy/graph.py #345

Merged pull requests:

• Add links to the original FaCT++ repo, GitHub profiles, etc. #600 (@blokhin)
• Added test update to PR template. #598 (@jesper-friis)
• Changed is_defined into a ThingClass property and improved its documentation. #597 (@jesper-friis)
• Added link to excelparser from tools for documentation of excel sheet. #594 (@francescalb)
• Bump SINTEF/ci-cd from 2.3.0 to 2.3.1 #584 (@dependabot[bot])
• Updated get_by_label() so that it now accepts label, name and full iri #582 (@jesper-friis)
• Added two additional exceptions to emmocheck #577 (@jesper-friis)
• Bump SINTEF/ci-cd from 2.2.1 to 2.3.0 #575 (@dependabot[bot])
• get_ancestors and get_descendants have the same arguments. #572 (@francescalb)
• Bump SINTEF/ci-cd from 2.2.0 to 2.2.1 #571 (@dependabot[bot])
• ontograph: colour updates, examples, bugfix #569 (@francescalb)
• Bump SINTEF/ci-cd from 2.1.0 to 2.2.0 #567 (@dependabot[bot])
• Changed argument leafs to leaves, with deprecation warning in ontograph #564 (@francescalb)
• Corrected bug on getting default relation style. #561 (@francescalb)
• Fix internal links in generated documentation generated with ontodoc #548 (@jesper-friis)

v0.5.1 (2023-02-07)

Full Changelog

Fixed bugs:

• Use custom token for GitHub changelog generator #545
• Avoid using Azure mirror for APT packages #541

Merged pull requests:

• Use SINTEF/ci-cd v2.1.0 in CI/CD workflows #546 (@CasperWA)
• Revert version to v0.5.0 #544 (@CasperWA)
• Fix ontodoc for bigmap #543 (@jesper-friis)

v0.5.0 (2023-02-06)

Full Changelog

Fixed bugs:

• LegacyVersion does not exist in packaging.version #540
• ontodoc: Expect is_instance_of property to be iterable #506
• Reinstate images/material.png #495

Closed issues:

• Newest pylint (2.15.4) has intriduced some new rules. #534
• sync_attributes according to emmo convention regenerates a new iri even if it already has a valid one #525
• Remove dependency on LegacyVersion of packaging #514
• pytests are importing packaging 22.0 even though it is not allowed in requirements #513
• ontodoc: adding annotations that are not strings fail #510
• get_by_label_all only works after sync_attributes #502
• excel2onto: support updating ontology #501
• excel2onto: allow to use prefLabel already in imported ontologies #500
• Drop Python 3.6 support - extend Python >3.7 support #486
• Update pypi-release github action #482
• Make workflows dispatchable #481
• excel2onto: Read catalog file for imported ontology #474
• Give option to write_catalog for writing relative paths #473
• excel2onto: add choice of prefix for imported ontologies #467

Merged pull requests:

• Fix fixtures for Python3.7 #536 (@CasperWA)
• Flb/fix to pylint2.15.4 #535 (@francescalb)
• Bypass punning in ontodoc. #532 (@francescalb)
• Added possibility to update ontology. #527 (@francescalb)
• Only generate new uuid if not already a valid one #526 (@francescalb)
• Removed LegacyVersion from ontopy.utils #515 (@...

v0.5.3.2

Fix in cd workflows

v0.5.3.1

Rerelease v0.5.3 to fix pypi package