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learn.qmd
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---
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html:
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---
# Learning materials
We organise our training materials in two curricula. The **Outbreak Analytics curriculum** aims to facilitate finding, choosing, and using R packages for outbreak analytics tasks to inform decision-making. The **Research Sofware curriculum** aims to extend our R toolset to produce open, reproducible and sustainable data analysis projects following good Research Sofware practices.
We address these goals with an e-Epi training kit, Tutorials, Case studies, and How-to guides:
- The **e-Epi training kit** is an e-learning strategy for progressive
and flexible learning. It includes an introductory e-course in data
science for public health and infectious disease modelling in Latin
America and the Caribbean with a gender perspective. Initially only
with content in Spanish. (coming soon)
- **Tutorials** will help you learn how to complete an outbreak analytic
task following a practical step-by-step guide using R packages to
start your own journey.
- **Case studies** are real-life retrospective accounts of real projects
delivered by users in the field. (coming soon)
- **How-to guides** are question-specific recipe-like scripts to show
how multiple R packages can interoperate to get a solution.
Please note the development stage of the learning materials. A "pre-alpha" tutorial is still being constructed. An "alpha" tutorial is being taught by the original authors but has not been fully tested.
## Outbreak Analytics Curriculum
These workshops focus on working with outbreak data using peer-reviewed interoperable open-source software like R packages to help the decision-making process in public health.
### e-Epi training kit en Español
El **e-Epi-training kit** es una estrategia para el aprendizaje en línea que permite un aprendizaje progresivo y flexible. Este kit incluye el curso virtual en ciencia de datos en salud pública y modelamiento de enfermedades infecciosas, el cual está dirigido a América Latina y el Caribe y cuenta con un enfoque de género. [Leer más detalles sobre la estrategia en línea](https://epiverse-trace.github.io/epi-training-kit/).
### Tutoriales en Español
| Tutorial | Sitio | Repositorio | Agenda para instructoras/es | Fase de desarrollo |
| -------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Análisis de Brotes y Modelamiento en Salud Pública | [{{< fa regular window-maximize title="Website">}}](https://epiverse-trace.github.io/epimodelac/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/epimodelac/) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/epimodelac/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
: {.striped .hover}
### Tutorials in English
| Tutorial | Site | Repository | Instructor Schedule | Development stage |
| ---------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Reading and cleaning data for outbreak analytics with R | [{{< fa regular window-maximize title="Website">}}](https://epiverse-trace.github.io/tutorials-early/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/tutorials-early) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/tutorials-early/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
| Real-time analysis and forecasting for outbreak analytics with R | [{{< fa regular window-maximize title="Website">}}](https://epiverse-trace.github.io/tutorials-middle/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/tutorials-middle) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/tutorials-middle/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
| Scenario modelling for outbreak analytics with R | [{{< fa regular window-maximize title="Website">}}](https://epiverse-trace.github.io/tutorials-late/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/tutorials-late) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/tutorials-late/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
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### How-to guides in English
| Material | Site | Repository | Instructor schedule | Development stage |
| ------------------------------------------- | --------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------- | ------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| How-to guides for Outbreak Analytics with R | [{{< fa regular window-maximize title="Website" >}}](https://epiverse-trace.github.io/howto/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/howto) | | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
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## Research Software Curriculum
The focus of these workshops is on best practices for your outbreak analytics R projects and data. This uses command line utilities and complementary R packages to improve the openness, reproducibility, and sustainability of your analysis project.
| Tutorial | Site | Repository | Instructor schedule | Development stage |
| ---------------------------------------------- | ----------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Version Control with Git in Rstudio | [{{< fa regular window-maximize title="Website" >}}](https://epiverse-trace.github.io/git-rstudio-basics/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/git-rstudio-basics/) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/git-rstudio-basics/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
| Improve your code for Epidemic Analysis with R | [{{< fa regular window-maximize title="Website" >}}](https://epiverse-trace.github.io/research-compendium/) | [{{< fa brands github title="GitHub Repository" >}}](https://github.com/epiverse-trace/research-compendium) | [{{< fa solid person-chalkboard title="Instructor view">}}](https://epiverse-trace.github.io/research-compendium/instructor/index.html) | [](https://carpentries.github.io/lesson-development-training/lesson-design.html#iterative-development) |
: {.striped .hover}
Para **Tutoriales en Español** recomendamos la [curricula del Software Carpentry en Español](https://software-carpentry.org/lessons/) con tutoriales sobre La terminal de Unix, Control de versiones con R, y R para análisis cientificos reproducible
## Your questions
Are you interested in participating in any of our workshops? Sign up for [our mailing list](https://data.org/initiatives/epiverse/our-community/), or follow us on Twitter at [Epiverse_TRACE](https://twitter.com/Epiverse_TRACE). You can also subscribe to [our blog feed](https://epiverse-trace.github.io/blog.html) and [take a look at our events calendar](https://view.monday.com/1267767805-fb40bb51c837164bf95532907829c3f8?r=euc1).
Are you interested in teaching these materials? For this and more questions about broader training topics, [start a discussion](https://github.com/orgs/epiverse-trace/discussions/new/choose).
For questions about a specific learning material, go to its repository to [create an issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue).