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CITATION.cff
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# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "linelist" in publications use:'
type: software
license: MIT
title: 'linelist: Tagging and Validating Epidemiological Data'
version: 1.1.4.9000
doi: 10.5281/zenodo.6532786
abstract: Provides tools to help storing and handling case line list data. The 'linelist'
class adds a tagging system to classical 'data.frame' objects to identify key epidemiological
data such as dates of symptom onset, epidemiological case definition, age, gender
or disease outcome. Once tagged, these variables can be seamlessly used in downstream
analyses, making data pipelines more robust and reliable.
authors:
- family-names: Gruson
given-names: Hugo
email: hugo@data.org
orcid: https://orcid.org/0000-0002-4094-1476
- family-names: Jombart
given-names: Thibaut
preferred-citation:
type: manual
title: 'linelist: Tagging and Validating Epidemiological Data'
authors:
- family-names: Gruson
given-names: Hugo
email: hugo@data.org
orcid: https://orcid.org/0000-0002-4094-1476
- family-names: Jombart
given-names: Thibaut
year: '2024'
doi: 10.5281/zenodo.6532786
url: https://epiverse-trace.github.io/linelist/
repository: https://CRAN.R-project.org/package=linelist
repository-code: https://github.com/epiverse-trace/linelist
url: https://epiverse-trace.github.io/linelist/
contact:
- family-names: Gruson
given-names: Hugo
email: hugo@data.org
orcid: https://orcid.org/0000-0002-4094-1476
keywords:
- data
- data-structures
- epidemiology
- epiverse
- outbreaks
- r
- r-package
- sdg-3
- structured-data
references:
- type: software
title: 'R: A Language and Environment for Statistical Computing'
notes: Depends
url: https://www.R-project.org/
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
version: '>= 3.1.0'
- type: software
title: checkmate
abstract: 'checkmate: Fast and Versatile Argument Checks'
notes: Imports
url: https://mllg.github.io/checkmate/
repository: https://CRAN.R-project.org/package=checkmate
authors:
- family-names: Lang
given-names: Michel
email: michellang@gmail.com
orcid: https://orcid.org/0000-0001-9754-0393
year: '2024'
- type: software
title: dplyr
abstract: 'dplyr: A Grammar of Data Manipulation'
notes: Imports
url: https://dplyr.tidyverse.org
repository: https://CRAN.R-project.org/package=dplyr
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: François
given-names: Romain
orcid: https://orcid.org/0000-0002-2444-4226
- family-names: Henry
given-names: Lionel
- family-names: Müller
given-names: Kirill
orcid: https://orcid.org/0000-0002-1416-3412
- family-names: Vaughan
given-names: Davis
email: davis@posit.co
orcid: https://orcid.org/0000-0003-4777-038X
year: '2024'
- type: software
title: lifecycle
abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
notes: Imports
url: https://lifecycle.r-lib.org/
repository: https://CRAN.R-project.org/package=lifecycle
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
year: '2024'
- type: software
title: rlang
abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
notes: Imports
url: https://rlang.r-lib.org
repository: https://CRAN.R-project.org/package=rlang
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
- type: software
title: tidyselect
abstract: 'tidyselect: Select from a Set of Strings'
notes: Imports
url: https://tidyselect.r-lib.org
repository: https://CRAN.R-project.org/package=tidyselect
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
- type: software
title: callr
abstract: 'callr: Call R from R'
notes: Suggests
url: https://callr.r-lib.org
repository: https://CRAN.R-project.org/package=callr
authors:
- family-names: Csárdi
given-names: Gábor
email: csardi.gabor@gmail.com
orcid: https://orcid.org/0000-0001-7098-9676
- family-names: Chang
given-names: Winston
year: '2024'
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
url: https://yihui.org/knitr/
repository: https://CRAN.R-project.org/package=knitr
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2024'
- type: software
title: magrittr
abstract: 'magrittr: A Forward-Pipe Operator for R'
notes: Suggests
url: https://magrittr.tidyverse.org
repository: https://CRAN.R-project.org/package=magrittr
authors:
- family-names: Bache
given-names: Stefan Milton
email: stefan@stefanbache.dk
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
year: '2024'
- type: software
title: outbreaks
abstract: 'outbreaks: A Collection of Disease Outbreak Data'
notes: Suggests
url: https://github.com/reconhub/outbreaks
repository: https://CRAN.R-project.org/package=outbreaks
authors:
- family-names: Jombart
given-names: Thibaut
email: thibaut.jombart@gmail.com
- family-names: Frost
given-names: Simon
- family-names: Nouvellet
given-names: Pierre
- family-names: Campbell
given-names: Finlay
email: finlaycampbell93@gmail.com
- family-names: Sudre
given-names: Bertrand
email: bertrand.sudre@edc.europa.eu
year: '2024'
- type: software
title: rmarkdown
abstract: 'rmarkdown: Dynamic Documents for R'
notes: Suggests
url: https://pkgs.rstudio.com/rmarkdown/
repository: https://CRAN.R-project.org/package=rmarkdown
authors:
- family-names: Allaire
given-names: JJ
email: jj@posit.co
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
- family-names: Dervieux
given-names: Christophe
email: cderv@posit.co
orcid: https://orcid.org/0000-0003-4474-2498
- family-names: McPherson
given-names: Jonathan
email: jonathan@posit.co
- family-names: Luraschi
given-names: Javier
- family-names: Ushey
given-names: Kevin
email: kevin@posit.co
- family-names: Atkins
given-names: Aron
email: aron@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Cheng
given-names: Joe
email: joe@posit.co
- family-names: Chang
given-names: Winston
email: winston@posit.co
- family-names: Iannone
given-names: Richard
email: rich@posit.co
orcid: https://orcid.org/0000-0003-3925-190X
year: '2024'
- type: software
title: spelling
abstract: 'spelling: Tools for Spell Checking in R'
notes: Suggests
url: https://ropensci.r-universe.dev/spelling
repository: https://CRAN.R-project.org/package=spelling
authors:
- family-names: Ooms
given-names: Jeroen
email: jeroen@berkeley.edu
orcid: https://orcid.org/0000-0002-4035-0289
- family-names: Hester
given-names: Jim
email: james.hester@rstudio.com
year: '2024'
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
- type: software
title: tibble
abstract: 'tibble: Simple Data Frames'
notes: Suggests
url: https://tibble.tidyverse.org/
repository: https://CRAN.R-project.org/package=tibble
authors:
- family-names: Müller
given-names: Kirill
email: kirill@cynkra.com
orcid: https://orcid.org/0000-0002-1416-3412
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
year: '2024'