generated from epiverse-trace/packagetemplate
-
Notifications
You must be signed in to change notification settings - Fork 2
/
CITATION.cff
294 lines (292 loc) · 8.72 KB
/
CITATION.cff
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "superspreading" in publications use:'
type: software
license: MIT
title: 'superspreading: Estimate Individual-Level Variation in Transmission'
version: 0.2.0.9000
abstract: Implements functions to estimate individual-level variation in transmission.
authors:
- family-names: Lambert
given-names: Joshua W.
email: joshua.lambert@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-5218-3046
- family-names: Kucharski
given-names: Adam
email: adam.kucharski@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-8814-9421
repository-code: https://github.com/epiverse-trace/superspreading
url: https://epiverse-trace.github.io/superspreading/
contact:
- family-names: Lambert
given-names: Joshua W.
email: joshua.lambert@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-5218-3046
keywords:
- disease-transmission
- epidemiology
- epiverse
- r
- r-package
references:
- type: software
title: checkmate
abstract: 'checkmate: Fast and Versatile Argument Checks'
notes: Imports
url: https://mllg.github.io/checkmate/
repository: https://CRAN.R-project.org/package=checkmate
authors:
- family-names: Lang
given-names: Michel
email: michellang@gmail.com
orcid: https://orcid.org/0000-0001-9754-0393
year: '2024'
- type: software
title: stats
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
- type: software
title: bpmodels
abstract: 'bpmodels: Simulating and Analysing Transmission Chain Statistics using
Branching Process Models'
notes: Imports
url: https://epiverse-trace.github.io/bpmodels/
authors:
- family-names: Azam
given-names: James M.
email: james.azam@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-5782-7330
- family-names: Finger
given-names: Flavio
email: flavio.finger@epicentre.msf.org
orcid: https://orcid.org/0000-0002-8613-5170
- family-names: Funk
given-names: Sebastian
email: sebastian.funk@lshtm.ac.uk
orcid: https://orcid.org/0000-0002-2842-3406
year: '2024'
- type: software
title: rlang
abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
notes: Imports
url: https://rlang.r-lib.org
repository: https://CRAN.R-project.org/package=rlang
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
- type: software
title: epiparameter
abstract: 'epiparameter: Library of Epidemiological Parameters'
notes: Suggests
url: https://epiverse-trace.github.io/epiparameter/
authors:
- family-names: Lambert
given-names: Joshua W.
email: joshua.lambert@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-5218-3046
- family-names: Kucharski
given-names: Adam
email: adam.kucharski@lshtm.ac.uk
orcid: https://orcid.org/0000-0001-8814-9421
year: '2024'
- type: software
title: fitdistrplus
abstract: 'fitdistrplus: Help to Fit of a Parametric Distribution to Non-Censored
or Censored Data'
notes: Suggests
url: https://lbbe.univ-lyon1.fr/fr/fitdistrplus
repository: https://CRAN.R-project.org/package=fitdistrplus
authors:
- family-names: Delignette-Muller
given-names: Marie-Laure
email: marielaure.delignettemuller@vetagro-sup.fr
orcid: https://orcid.org/0000-0001-5453-3994
- family-names: Dutang
given-names: Christophe
email: christophe.dutang@ensimag.fr
orcid: https://orcid.org/0000-0001-6732-1501
- family-names: Siberchicot
given-names: Aurelie
email: aurelie.siberchicot@univ-lyon1.fr
orcid: https://orcid.org/0000-0002-7638-8318
year: '2024'
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
url: https://yihui.org/knitr/
repository: https://CRAN.R-project.org/package=knitr
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2024'
- type: software
title: bookdown
abstract: 'bookdown: Authoring Books and Technical Documents with R Markdown'
notes: Suggests
url: https://pkgs.rstudio.com/bookdown/
repository: https://CRAN.R-project.org/package=bookdown
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2024'
- type: software
title: rmarkdown
abstract: 'rmarkdown: Dynamic Documents for R'
notes: Suggests
url: https://pkgs.rstudio.com/rmarkdown/
repository: https://CRAN.R-project.org/package=rmarkdown
authors:
- family-names: Allaire
given-names: JJ
email: jj@posit.co
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
- family-names: Dervieux
given-names: Christophe
email: cderv@posit.co
orcid: https://orcid.org/0000-0003-4474-2498
- family-names: McPherson
given-names: Jonathan
email: jonathan@posit.co
- family-names: Luraschi
given-names: Javier
- family-names: Ushey
given-names: Kevin
email: kevin@posit.co
- family-names: Atkins
given-names: Aron
email: aron@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Cheng
given-names: Joe
email: joe@posit.co
- family-names: Chang
given-names: Winston
email: winston@posit.co
- family-names: Iannone
given-names: Richard
email: rich@posit.co
orcid: https://orcid.org/0000-0003-3925-190X
year: '2024'
- type: software
title: ggplot2
abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
notes: Suggests
url: https://ggplot2.tidyverse.org
repository: https://CRAN.R-project.org/package=ggplot2
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Chang
given-names: Winston
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Henry
given-names: Lionel
- family-names: Pedersen
given-names: Thomas Lin
email: thomas.pedersen@posit.co
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Takahashi
given-names: Kohske
- family-names: Wilke
given-names: Claus
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Woo
given-names: Kara
orcid: https://orcid.org/0000-0002-5125-4188
- family-names: Yutani
given-names: Hiroaki
orcid: https://orcid.org/0000-0002-3385-7233
- family-names: Dunnington
given-names: Dewey
orcid: https://orcid.org/0000-0002-9415-4582
- family-names: Brand
given-names: Teun
name-particle: van den
orcid: https://orcid.org/0000-0002-9335-7468
year: '2024'
- type: software
title: spelling
abstract: 'spelling: Tools for Spell Checking in R'
notes: Suggests
url: https://ropensci.r-universe.dev/spelling
repository: https://CRAN.R-project.org/package=spelling
authors:
- family-names: Ooms
given-names: Jeroen
email: jeroen@berkeley.edu
orcid: https://orcid.org/0000-0002-4035-0289
- family-names: Hester
given-names: Jim
email: james.hester@rstudio.com
year: '2024'
- type: software
title: ggtext
abstract: 'ggtext: Improved Text Rendering Support for ''ggplot2'''
notes: Suggests
url: https://wilkelab.org/ggtext/
repository: https://CRAN.R-project.org/package=ggtext
authors:
- family-names: Wilke
given-names: Claus O.
email: wilke@austin.utexas.edu
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Wiernik
given-names: Brenton M.
email: brenton@wiernik.org
orcid: https://orcid.org/0000-0001-9560-6336
year: '2024'
- type: software
title: scales
abstract: 'scales: Scale Functions for Visualization'
notes: Suggests
url: https://scales.r-lib.org
repository: https://CRAN.R-project.org/package=scales
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Pedersen
given-names: Thomas Lin
email: thomas.pedersen@posit.co
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Seidel
given-names: Dana
year: '2024'
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
version: '>= 3.0.0'