Handle empty fasta files (0.2.1)

erikrikarddaniel · Oct 14, 2019 · 9754b11 · 9754b11
1 parent d902f05
commit 9754b11
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Showing 4 changed files with 663 additions and 5 deletions.
diff --git a/src/R-test/Makefile b/src/R-test/Makefile
@@ -18,7 +18,7 @@ dada2cleanNmerge: dada2cleanNmerge.00
 
 dada2bimeras: dada2bimeras.00
 
-dada2idseq: dada2idseq.00 dada2idseq.01
+dada2idseq: dada2idseq.00 dada2idseq.01 dada2idseq.02
 
 dada2taxonomy: dada2taxonomy.00
 
@@ -57,6 +57,12 @@ dada2idseq.01:
 	@gunzip -c $@.out.tsv.gz >> $@.out
 	@$(CHECK)
 
+dada2idseq.02:
+	@cp $@.fna $@.out
+	@../R/dada2idseq.R --verbose --prefix=S_ --fnafile=$@.out --outtable=$@.out.tsv.gz $@.tsv.gz
+	@gunzip -c $@.out.tsv.gz >> $@.out
+	@$(CHECK)
+
 dada2taxonomy.00:
 	@../R/dada2taxonomy.R --verbose --seed 42 \
 	  --rdp_fasta ../../testdata/silva.fna.gz \