ManTIME is a Temporal information extraction pipeline for general and clinical domain. Given a piece of English text it is able to recognise and highlight clinical named entities (problems, treatments, clinical departments) and temporal expressions.
The clinical model is based on the (i2b2/2012 annotation schema), whereas the general model is based on the (TempEval-3 annotation schema) Models will be soon available.
##Dependencies
ManTIME is based on the following software components:
##Web interface
You can use ManTIME (TempEval-3 version) via its web server by (clicking here). It currently runs on my personal workstation. If the web service doesn't work that only means I am using my machine to do some intense computing. It will be back online soon. :)
##How to use it
Put the input files in a particular folder and run:
$ python mantime.py test [-ppp] <folder_path> <model_name>
the option -ppp uses the post-processing pipeline on top of the CRFs model.
You can also annotate just a sentence using the following command:
$ python mantime.py train <folder_path> <model_name>
The script will create a new model folder in mantime/models/.
##License
Copyright (c) 2012-2015, Michele Filannino All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
- Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
- Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
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##Contact