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Add CITATION.cff file #78

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40 changes: 40 additions & 0 deletions CITATION.cff
Original file line number Diff line number Diff line change
@@ -0,0 +1,40 @@
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: RnaChipIntegrator
version: 1.2.0
type: software
message: >-
If you use this software, please cite it using the
metadata from this file.
authors:
- given-names: Peter
family-names: Briggs
email: peter.briggs@manchester.ac.uk
affiliation: University of Manchester
- given-names: Ian
family-names: Donaldson
affiliation: University of Manchester
email: ian.donaldson@manchester.ac.uk
- given-names: Leo
family-names: Zeef
email: leo.zeef@manchester.ac.uk
affiliation: University of Manchester
identifiers:
- description: "Archived snapshots of all versions of RnaChipIntegrator"
type: doi
value: 10.5281/zenodo.592255
- description: "Archived snapshot of version 1.0.2 of RnaChipIntegrator"
type: doi
value: 10.5281/zenodo.60362
repository-code: >-
https://github.com/fls-bioinformatics-core/RnaChipIntegrator
url: >-
https://rnachipintegrator.readthedocs.io/en/latest/index.html
abstract: >-
RnaChipIntegrator is a software utility that performs
integrated analyses of 'gene' data (a set of genes or
other genomic features) with 'peak' data (a set of
regions, for example ChIP peaks) to identify the genes
nearest to each peak, and vice versa.
8 changes: 5 additions & 3 deletions docs/citing.rst
Original file line number Diff line number Diff line change
Expand Up @@ -6,12 +6,14 @@ Citing RnaChipIntegrator
If you use ``RnaChipIntegrator`` in your published work, please cite
the following reference:

* Briggs PJ, Donaldson IJ, Zeef LAH. RnaChipIntegrator (version
|version|). Available at:
* Briggs, P., Donaldson, I., Zeef, L. RnaChipIntegrator (version
|version|) [Computer software].
https://github.com/fls-bioinformatics-core/RnaChipIntegrator

The version number of the program can be obtained by executing the
command::
command:

::

RnaChipIntegrator --version

4 changes: 2 additions & 2 deletions rnachipintegrator/cli.py
Original file line number Diff line number Diff line change
Expand Up @@ -64,8 +64,8 @@ class _DEFAULTS(object):

If you use this program in your published work then please cite:

Briggs PJ, Donaldson IJ, Zeef LAH. RnaChipIntegrator
(version %s). Available at:
Briggs, P., Donaldson, I., Zeef, L. RnaChipIntegrator
(version %s) [Computer software].
https://github.com/fls-bioinformatics-core/RnaChipIntegrator
""" % __version__

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