README_en.md

gff2gggenes

installation

Suggest using pipx for installation. Of course you can use pip.

# from github
pipx install git+https://github.com/flyingicedragon/gff2gggenes.git
# or from gitee
pipx install git+https://gitee.com/flyingicedragon/gff2gggenes.git

Prepare GFF file

Make a GFF file. Only add genes need for ploting. Suggest using 'sed' on Linux mechine.

Call application

gff2gggenes --help
gff2gggenes test.gff
gff2gggenes test.gff --sub

Add --sub if you need genes' features.

Output

Output CSV file to work directory. Files end with "_gene.csv" or '_subgene.csv'