_pkgdown.yml

authors:
  Michael Stadler:
    href: https://github.com/mbstadler
  Lukas Burger:
    href: https://github.com/LukasBurger
  Charlotte Soneson:
    href: https://csoneson.github.io

url: https://fmicompbio.github.io/eisaR

navbar:
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - tutorials
    - news
    right: github
  components:
    articles:
      text: Articles
      menu:
      - text: eisaR
        href: articles/eisaR.html
      - text: Feature extraction for RNA velocity
        href: articles/rna-velocity.html
    github:
      icon: fa-github fa-lg
      href: https://github.com/fmicompbio/eisaR

reference:
- title: Feature extraction from gene annotation
  desc: "Extract exon/intron/gene features from gene annotation."
  contents:
    - '`getRegionsFromTxDb`'
    - '`getFeatureRanges`'
    - '`exportToGtf`'
    - '`getTx2Gene`'
- title: Run EISA
  desc: "Run Exon-Intron Split Analysis on bulk RNA-seq data"
  contents:
    - '`runEISA`'
    - '`plotEISA`'

template:
  params:
    bootswatch: cerulean