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update the basic usage notebook #67

update the basic usage notebook

update the basic usage notebook #67

Workflow file for this run

name: Build Docs
on:
push:
branches:
- main
tags:
- "v*"
jobs:
deploy:
name: Deploy Docs
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: 🐍 Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
cache-dependency-path: "pyproject.toml"
cache: "pip"
- name: Download Dataset from Zenodo
run: |
mkdir -p data
wget -O data/dataset.zip https://zenodo.org/records/13305156/files/20200812-CardiomyocyteDifferentiation14-Cycle1.zarr.zip?download=1?
unzip -o data/dataset.zip -d data
- name: Download Dataset from Zenodo MIP
run: |
mkdir -p data
wget -O data/dataset.zip https://zenodo.org/records/13305316/files/20200812-CardiomyocyteDifferentiation14-Cycle1_mip.zarr.zip?download=1?
unzip -o data/dataset.zip -d data
- name: Install Dependencies
run: |
python -m pip install -U pip
python -m pip install .[dev2]
python -m pip install .[docs]
- name: 📚 Build Docs
run: mkdocs build --clean
# If something goes wrong with --pre tests, we can open an issue in the repo
- name: Deploy Docs
uses: peaceiris/actions-gh-pages@v4
with:
personal_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: ./site