Mosaic CLI v0.7.0 (Linux x64)

Adds mosaic map-paths, which allows the user to map file paths in a gathered.mosaic.json.gz file.

A new file, gathered.mosaic.json.gz.mapped.gz will be created.

Mosaic CLI (Linux x64)

Requires reference to be supplied in mosaic init, to match Mosaic's new API.

Mosaic CLI (Linux x64)

New features:

• Recursive '-r' option for mosaic gather
• Clean up htslib index files and mosdepth regions temp file after running bam/vcf commands.
• Better reference validation.

Bugfixes:

• Fixing "-d" option, which didn't work on bam/gather cmds.
• Fixing vcf S3 behavior.