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Enhancement: sample ID handling #443
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Thanks @ptrebert |
And the last resort should be filename and not "SAMPLE", which would make bcftools merge work. imho |
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Hi,
I am using sniffles v2.2 and I have a few suggestions regarding the handling of the sample ID:
SM
tag. Based on the closed issue Better format of the VCF output #211 , I was assuming that this would be used in the VCF output, but the VCFs generated by sniffles simply stateSAMPLE
as sample ID--sample-id
solves this issue, yes, but the help/description does not make that obvious:--sample-id
is set.Thanks for developing this great tool!
Best,
Peter
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