diff --git a/cime_config/tuvx_MOZART_TS1.json b/cime_config/tuvx_MOZART_TS1.json
index 666cee23b7..e48df8c436 100644
--- a/cime_config/tuvx_MOZART_TS1.json
+++ b/cime_config/tuvx_MOZART_TS1.json
@@ -1,12 +1,10 @@
 {
    "__description": "TUV-x configuration for the MOZART-TS1 and MOZART-TSMLT chemical mechanisms",
-   "O2 absorption" : {
-     "cross section parameters file": "data/cross_sections/O2_parameters.txt"
+   "O2 absorption": {
+      "cross section parameters file": "data/cross_sections/O2_parameters.txt"
    },
-   "grids": [
-   ],
-   "profiles": [
-   ],
+   "grids": [],
+   "profiles": [],
    "radiative transfer": {
       "solver": {
          "type": "discrete ordinate",
@@ -20,21 +18,33 @@
          {
             "name": "O3",
             "netcdf files": [
-              { "file path": "data/cross_sections/O3_1.nc" },
-              { "file path": "data/cross_sections/O3_2.nc" },
-              { "file path": "data/cross_sections/O3_3.nc" },
-              { "file path": "data/cross_sections/O3_4.nc" }
+               {
+                  "file path": "data/cross_sections/O3_1.nc"
+               },
+               {
+                  "file path": "data/cross_sections/O3_2.nc"
+               },
+               {
+                  "file path": "data/cross_sections/O3_3.nc"
+               },
+               {
+                  "file path": "data/cross_sections/O3_4.nc"
+               }
             ],
             "type": "O3"
          },
          {
             "name": "O2",
             "netcdf files": [
-              {
-                "file path": "data/cross_sections/O2_1.nc",
-                "lower extrapolation": { "type": "boundary" },
-                "interpolator": { "type": "fractional target" }
-              }
+               {
+                  "file path": "data/cross_sections/O2_1.nc",
+                  "lower extrapolation": {
+                     "type": "boundary"
+                  },
+                  "interpolator": {
+                     "type": "fractional target"
+                  }
+               }
             ],
             "type": "base"
          }
@@ -70,28 +80,32 @@
             "name": "jo2_a",
             "__reaction": "O2 + hv -> O + O1D",
             "cross section": {
-              "netcdf files": [
-                {
-                   "file path": "data/cross_sections/O2_1.nc",
-                   "lower extrapolation": { "type": "boundary" },
-                   "interpolator": { "type": "fractional target" }
-                 }
+               "netcdf files": [
+                  {
+                     "file path": "data/cross_sections/O2_1.nc",
+                     "lower extrapolation": {
+                        "type": "boundary"
+                     },
+                     "interpolator": {
+                        "type": "fractional target"
+                     }
+                  }
                ],
                "type": "base"
             },
             "quantum yield": {
-              "type": "base",
-              "constant value": 0,
-              "override bands": [
-                {
-                  "band": "lyman-alpha",
-                  "value": 0.53
-                },
-                {
-                  "band": "schumann-runge continuum",
-                  "value": 1.0
-                }
-              ]
+               "type": "base",
+               "constant value": 0,
+               "override bands": [
+                  {
+                     "band": "lyman-alpha",
+                     "value": 0.53
+                  },
+                  {
+                     "band": "schumann-runge continuum",
+                     "value": 1.0
+                  }
+               ]
             }
          },
          {
@@ -99,11 +113,15 @@
             "__reaction": "O2 + hv -> O + O",
             "cross section": {
                "netcdf files": [
-                 {
-                   "file path": "data/cross_sections/O2_1.nc",
-                   "lower extrapolation": { "type": "boundary" },
-                   "interpolator": { "type": "fractional target" }
-                 }
+                  {
+                     "file path": "data/cross_sections/O2_1.nc",
+                     "lower extrapolation": {
+                        "type": "boundary"
+                     },
+                     "interpolator": {
+                        "type": "fractional target"
+                     }
+                  }
                ],
                "type": "base"
             },
@@ -111,14 +129,14 @@
                "type": "base",
                "constant value": 1.0,
                "override bands": [
-                 {
-                   "band": "lyman-alpha",
-                   "value": 0.47
-                 },
-                 {
-                   "band": "schumann-runge continuum",
-                   "value": 0.0
-                 }
+                  {
+                     "band": "lyman-alpha",
+                     "value": 0.47
+                  },
+                  {
+                     "band": "schumann-runge continuum",
+                     "value": 0.0
+                  }
                ]
             }
          },
@@ -127,10 +145,18 @@
             "__reaction": "O3 + hv -> O2 + O(1D)",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/O3_1.nc" },
-                 { "file path": "data/cross_sections/O3_2.nc" },
-                 { "file path": "data/cross_sections/O3_3.nc" },
-                 { "file path": "data/cross_sections/O3_4.nc" }
+                  {
+                     "file path": "data/cross_sections/O3_1.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_2.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_3.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_4.nc"
+                  }
                ],
                "type": "O3"
             },
@@ -143,10 +169,18 @@
             "__reaction": "O3 + hv -> O2 + O(3P)",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/O3_1.nc" },
-                 { "file path": "data/cross_sections/O3_2.nc" },
-                 { "file path": "data/cross_sections/O3_3.nc" },
-                 { "file path": "data/cross_sections/O3_4.nc" }
+                  {
+                     "file path": "data/cross_sections/O3_1.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_2.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_3.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/O3_4.nc"
+                  }
                ],
                "type": "O3"
             },
@@ -170,14 +204,20 @@
             "__reaction": "NO2 + hv -> NO + O(3P)",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/NO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/NO2_1.nc"
+                  }
                ],
                "type": "NO2 tint"
             },
             "quantum yield": {
-               "netcdf files": ["data/quantum_yields/NO2_1.nc"],
+               "netcdf files": [
+                  "data/quantum_yields/NO2_1.nc"
+               ],
                "type": "NO2 tint",
-               "lower extrapolation": { "type": "boundary" }
+               "lower extrapolation": {
+                  "type": "boundary"
+               }
             }
          },
          {
@@ -185,14 +225,20 @@
             "__reaction": "N2O5 + hv -> NO2 + NO3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/N2O5_1.nc" },
-                 { "file path": "data/cross_sections/N2O5_2.nc" }
+                  {
+                     "file path": "data/cross_sections/N2O5_1.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/N2O5_2.nc"
+                  }
                ],
                "type": "N2O5+hv->NO2+NO3"
             },
             "quantum yield": {
                "type": "base",
-               "netcdf files": [ "data/quantum_yields/N2O5_NO3_NO2.nc" ]
+               "netcdf files": [
+                  "data/quantum_yields/N2O5_NO3_NO2.nc"
+               ]
             }
          },
          {
@@ -200,14 +246,20 @@
             "__reaction": "N2O5 + hv -> NO + O + NO3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/N2O5_1.nc" },
-                 { "file path": "data/cross_sections/N2O5_2.nc" }
+                  {
+                     "file path": "data/cross_sections/N2O5_1.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/N2O5_2.nc"
+                  }
                ],
                "type": "N2O5+hv->NO2+NO3"
             },
             "quantum yield": {
                "type": "base",
-               "netcdf files": [ "data/quantum_yields/N2O5_NO3_NO_O.nc" ]
+               "netcdf files": [
+                  "data/quantum_yields/N2O5_NO3_NO_O.nc"
+               ]
             }
          },
          {
@@ -215,7 +267,9 @@
             "__reaction": "HNO3 + hv -> OH + NO2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HNO3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HNO3_1.nc"
+                  }
                ],
                "type": "HNO3+hv->OH+NO2"
             },
@@ -229,7 +283,9 @@
             "__reaction": "NO3 + hv -> NO2 + O(3P)",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/NO3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/NO3_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -249,7 +305,9 @@
             "__reaction": "NO3 + hv -> NO + O2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/NO3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/NO3_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -265,7 +323,9 @@
             "__reaction": "CH3OOH + hv -> CH3O + OH",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3OOH_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3OOH_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -279,7 +339,9 @@
             "__reaction": "CH2O + hv -> H + HCO",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH2O_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH2O_1.nc"
+                  }
                ],
                "type": "CH2O"
             },
@@ -298,7 +360,9 @@
             "__reaction": "CH2O + hv -> H2 + CO",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH2O_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH2O_1.nc"
+                  }
                ],
                "type": "CH2O"
             },
@@ -317,7 +381,9 @@
             "__reaction": "H2O2 + hv -> OH + OH",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/H2O2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/H2O2_1.nc"
+                  }
                ],
                "type": "H2O2+hv->OH+OH"
             },
@@ -331,7 +397,9 @@
             "__reaction": "CH3CHO + hv -> CH3 + HCO",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3CHO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3CHO_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -347,7 +415,9 @@
             "__reaction": "PAN + hv -> 0.6*CH3CO3 + 0.6*NO2 + 0.4*CH3O2 + 0.4*NO3 + 0.4*CO2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/PAN_1.nc" }
+                  {
+                     "file path": "data/cross_sections/PAN_1.nc"
+                  }
                ],
                "type": "CH3ONO2+hv->CH3O+NO2"
             },
@@ -361,7 +431,9 @@
             "__reaction": "MVK + hv -> 0.7*C3H6 + 0.7*CO + 0.3*CH3O2 + 0.3*CH3CO3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/MVK_1.nc" }
+                  {
+                     "file path": "data/cross_sections/MVK_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -374,7 +446,9 @@
             "__reaction": "CH3COCH3 + hv -> CH3CO + CH3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3COCH3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3COCH3_1.nc"
+                  }
                ],
                "type": "CH3COCH3+hv->CH3CO+CH3"
             },
@@ -387,7 +461,9 @@
             "__reaction": "CH3COCHO + hv -> CH3CO3 + CO + HO2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3COCHO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3COCHO_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -400,7 +476,9 @@
             "__reaction": "GLYALD + hv -> 2*HO2 + CO + CH2O",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HOCH2CHO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HOCH2CHO_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -415,7 +493,9 @@
             "__comments": "TODO the products of this reaction don't exactly match",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CHOCHO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CHOCHO_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -434,7 +514,9 @@
             "__reaction": "BrCl + hv -> Br + Cl",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/BrCl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/BrCl_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -448,13 +530,13 @@
             "__reaction": "BrO + hv -> Br + O",
             "cross section": {
                "netcdf files": [
-                 {
-                   "file path": "data/cross_sections/BrO_1.nc",
-                   "interpolator": {
-                      "type": "fractional target",
-                      "fold in": true
-                   }
-                 }
+                  {
+                     "file path": "data/cross_sections/BrO_1.nc",
+                     "interpolator": {
+                        "type": "fractional target",
+                        "fold in": true
+                     }
+                  }
                ],
                "type": "base"
             },
@@ -468,7 +550,9 @@
             "__reaction": "BrONO2 + hv -> Br + NO3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/BrONO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/BrONO2_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -482,7 +566,9 @@
             "__reaction": "BrONO2 + hv -> BrO + NO2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/BrONO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/BrONO2_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -496,7 +582,9 @@
             "__reaction": "CCl4 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CCl4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CCl4_1.nc"
+                  }
                ],
                "type": "CCl4+hv->Products"
             },
@@ -510,7 +598,9 @@
             "__reaction": "CF2BrCl + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CF2BrCl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CF2BrCl_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -524,7 +614,9 @@
             "__reaction": "CF3Br + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CF3Br_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CF3Br_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -538,7 +630,9 @@
             "__reaction": "CCl3F + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CFC-11_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CFC-11_1.nc"
+                  }
                ],
                "type": "CCl3F+hv->Products"
             },
@@ -552,7 +646,9 @@
             "__reaction": "CFC-113 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CFC-113_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CFC-113_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -566,7 +662,9 @@
             "__reaction": "CFC-114 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CFC-114_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CFC-114_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -580,7 +678,9 @@
             "__reaction": "CFC-115 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CFC-115_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CFC-115_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -594,7 +694,9 @@
             "__reaction": "CCl2F2 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CFC-12_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CFC-12_1.nc"
+                  }
                ],
                "type": "CCl3F+hv->Products"
             },
@@ -610,9 +712,27 @@
                "type": "temperature based",
                "netcdf file": "data/cross_sections/CH2BR2_1.nc",
                "parameterization": {
-                  "AA": [ -70.211776,  1.940326e-1, 2.726152e-3, -1.695472e-5, 2.500066e-8  ],
-                  "BB": [   2.899280, -4.327724e-2, 2.391599e-4, -5.807506e-7, 5.244883e-10 ],
-                  "lp": [        0.0,          1.0,          2.0,         3.0,          4.0 ],
+                  "AA": [
+                     -70.211776,
+                     1.940326e-1,
+                     2.726152e-3,
+                     -1.695472e-5,
+                     2.500066e-8
+                  ],
+                  "BB": [
+                     2.899280,
+                     -4.327724e-2,
+                     2.391599e-4,
+                     -5.807506e-7,
+                     5.244883e-10
+                  ],
+                  "lp": [
+                     0.0,
+                     1.0,
+                     2.0,
+                     3.0,
+                     4.0
+                  ],
                   "minimum wavelength": 210.0,
                   "maximum wavelength": 290.0,
                   "temperature ranges": [
@@ -641,7 +761,9 @@
             "__reaction": "CH3Br + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3Br_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3Br_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -655,7 +777,9 @@
             "__reaction": "CH3CCl3+hv->Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3CCl3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3CCl3_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -669,7 +793,9 @@
             "__reaction": "CH3Cl + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3Cl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3Cl_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -683,7 +809,9 @@
             "__reaction": "CHBr3 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CHBr3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CHBr3_1.nc"
+                  }
                ],
                "type": "CHBr3+hv->Products",
                "lower extrapolation": {
@@ -712,7 +840,9 @@
             "__comments": "TODO - this doesn't exactly match the products in TS1",
             "cross section": {
                "netcdf files": [
-                  { "file path": "data/cross_sections/ClOOCl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/ClOOCl_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -726,7 +856,9 @@
             "__reaction": "ClO + hv -> Cl + O(1D)",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/ClO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/ClO_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -739,7 +871,9 @@
             "__reaction": "ClONO2 + hv -> Cl + NO3",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/ClONO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/ClONO2_1.nc"
+                  }
                ],
                "type": "ClONO2"
             },
@@ -752,7 +886,9 @@
             "__reaction": "ClONO2 + hv -> ClO + NO2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/ClONO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/ClONO2_1.nc"
+                  }
                ],
                "type": "ClONO2"
             },
@@ -765,7 +901,9 @@
             "__reaction": "CF2O + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CF2O_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CF2O_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -779,7 +917,9 @@
             "__reaction": "CClFO + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CClFO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CClFO_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -794,7 +934,9 @@
             "__comments": "TUV data set name CF2BrCF2Br",
             "cross section": {
                "netcdf files": [
-                  { "file path": "data/cross_sections/CF2BrCF2Br_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CF2BrCF2Br_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -808,7 +950,9 @@
             "__reaction": "HCFC-141b + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3CFCl2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3CFCl2_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -822,7 +966,9 @@
             "__reaction": "HCFC-142b + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CH3CF2Cl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH3CF2Cl_1.nc"
+                  }
                ],
                "type": "HCFC+hv->Products"
             },
@@ -836,7 +982,9 @@
             "__reaction": "HCFC-22 + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/CHClF2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CHClF2_1.nc"
+                  }
                ],
                "type": "tint"
             },
@@ -850,7 +998,9 @@
             "__reaction": "HCl + hv -> H + Cl",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HCl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HCl_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -875,7 +1025,9 @@
             "__reaction": "HOCl + hv -> HO + Cl",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HOCl_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HOCl_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -889,9 +1041,15 @@
             "__reaction": "OClO + hv -> Products",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/OClO_1.nc" },
-                 { "file path": "data/cross_sections/OClO_2.nc" },
-                 { "file path": "data/cross_sections/OClO_3.nc" }
+                  {
+                     "file path": "data/cross_sections/OClO_1.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/OClO_2.nc"
+                  },
+                  {
+                     "file path": "data/cross_sections/OClO_3.nc"
+                  }
                ],
                "type": "OClO+hv->Products"
             },
@@ -906,7 +1064,9 @@
             "__comments": "TODO Doug's data sets have special temperature dependence - need new type?",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HNO4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HNO4_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -921,7 +1081,9 @@
             "__comments": "TODO Doug's data sets have special temperature dependence - need new type?",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/HNO4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HNO4_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -936,7 +1098,9 @@
             "__comments": "Methacrolein photolysis channel 1",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/Methacrolein_1.nc" }
+                  {
+                     "file path": "data/cross_sections/Methacrolein_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -951,7 +1115,9 @@
             "__comments": "Methacrolein photolysis channel 2",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/Methacrolein_1.nc" }
+                  {
+                     "file path": "data/cross_sections/Methacrolein_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -966,7 +1132,9 @@
             "__comments": "hydroxy acetone TODO: the products of this reaction differ from standalone TUV-x",
             "cross section": {
                "netcdf files": [
-                 { "file path": "data/cross_sections/Hydroxyacetone_1.nc" }
+                  {
+                     "file path": "data/cross_sections/Hydroxyacetone_1.nc"
+                  }
                ],
                "type": "base"
             },
@@ -997,9 +1165,11 @@
                   }
                ]
             },
-            "quantum yield" : {
+            "quantum yield": {
                "type": "base",
-               "netcdf files": [ "data/quantum_yields/H2O_H_OH.nc" ]
+               "netcdf files": [
+                  "data/quantum_yields/H2O_H_OH.nc"
+               ]
             }
          },
          {
@@ -1024,9 +1194,11 @@
                   }
                ]
             },
-            "quantum yield" : {
+            "quantum yield": {
                "type": "base",
-               "netcdf files": [ "data/quantum_yields/H2O_H2_O1D.nc" ]
+               "netcdf files": [
+                  "data/quantum_yields/H2O_H2_O1D.nc"
+               ]
             }
          },
          {
@@ -1051,9 +1223,11 @@
                   }
                ]
             },
-            "quantum yield" : {
+            "quantum yield": {
                "type": "base",
-               "netcdf files": [ "data/quantum_yields/H2O_2H_O3P.nc" ]
+               "netcdf files": [
+                  "data/quantum_yields/H2O_2H_O3P.nc"
+               ]
             }
          },
          {
@@ -1062,7 +1236,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/CH4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH4_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1076,7 +1252,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/CH4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CH4_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1090,7 +1268,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/CO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/CO2_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1104,7 +1284,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/HBr_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HBr_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1118,7 +1300,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/HF_1.nc" }
+                  {
+                     "file path": "data/cross_sections/HF_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1132,7 +1316,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/SF6_1.nc" }
+                  {
+                     "file path": "data/cross_sections/SF6_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1146,7 +1332,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/H2SO4_1.nc" }
+                  {
+                     "file path": "data/cross_sections/H2SO4_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1160,7 +1348,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/OCS_1.nc" }
+                  {
+                     "file path": "data/cross_sections/OCS_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1174,7 +1364,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/SO_1.nc" }
+                  {
+                     "file path": "data/cross_sections/SO_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1188,7 +1380,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/SO2_1.nc" }
+                  {
+                     "file path": "data/cross_sections/SO2_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1202,7 +1396,9 @@
             "cross section": {
                "type": "base",
                "netcdf files": [
-                  { "file path": "data/cross_sections/SO3_1.nc" }
+                  {
+                     "file path": "data/cross_sections/SO3_1.nc"
+                  }
                ]
             },
             "quantum yield": {
@@ -1213,274 +1409,276 @@
       ]
    },
    "__CAM options": {
-     "aliasing": {
-       "default matching": "backup",
-       "pairs": [
-           {
-              "to": "jalknit",
-              "__reaction": "ALKNIT + hv -> NO2 + 0.4*CH3CHO + 0.1*CH2O + 0.25*CH3COCH3 + HO2 + 0.8*MEK",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jpooh",
-              "__reaction": "POOH (C3H6OHOOH) + hv -> CH3CHO + CH2O + HO2 + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jch3co3h",
-              "__reaction": "CH3COOOH + hv -> CH3O2 + OH + CO2",
-              "from": "jh2o2",
-              "scale by": 0.28
-           },
-           {
-              "to": "jmpan",
-              "__reaction": "MPAN + hv -> MCO3 + NO2",
-              "from": "jpan"
-           },
-           {
-              "to": "jc2h5ooh",
-              "__reaction": "C2H5OOH + hv -> CH3CHO + HO2 + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jc3h7ooh",
-              "__reaction": "C3H7OOH + hv -> 0.82*CH3COCH3 + OH + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jc6h5ooh",
-              "__reaction": "C6H5OOH + hv -> PHENO + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jeooh",
-              "__reaction": "EOOH + hv -> EO + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jrooh",
-              "__reaction": "ROOH + hv -> CH3CO3 + CH2O + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jxooh",
-              "__reaction": "XOOH + hv -> OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jonitr",
-              "__reaction": "ONITR + hv -> NO2",
-              "from": "jch3cho"
-           },
-           {
-              "to": "jisopooh",
-              "__reaction": "ISOPOOH + hv -> 0.402*MVK + 0.288*MACR + 0.69*CH2O + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jmek",
-              "__reaction": "MEK + hv -> CH3CO3 + C2H5O2",
-              "from": "jacet"
-           },
-           {
-              "to": "jalkooh",
-              "__reaction": "ALKOOH + hv  -> .4*CH3CHO + .1*CH2O + .25*CH3COCH3 + .9*HO2 + .8*MEK + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jbenzooh",
-              "__reaction": "BENZOOH + hv -> OH + GLYOXAL + 0.5*BIGALD1 + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jbepomuc",
-              "__reaction": "BEPOMUC + hv -> BIGALD1 + 1.5*HO2 + 1.5*CO",
-              "from": "jno2",
-              "scale by": 0.1
-           },
-           {
-              "to": "jbigald",
-              "__reaction": "BIGALD + hv -> 0.45*CO + 0.13*GLYOXAL + 0.56*HO2 + 0.13*CH3CO3 + 0.18*CH3COCHO",
-              "from": "jno2",
-              "scale by": 0.2
-           },
-           {
-              "to": "jbigald1",
-              "__reaction": "BIGALD1 + hv -> 0.6*MALO2 + HO2",
-              "from": "jno2",
-              "scale by": 0.14
-           },
-           {
-              "to": "jbigald2",
-              "__reaction": "BIGALD2 + hv -> 0.6*HO2 + 0.6*DICARBO2",
-              "from": "jno2",
-              "scale by": 0.2
-           },
-           {
-              "to": "jbigald3",
-              "__reaction": "BIGALD3 + hv -> 0.6*HO2 + 0.6*CO + 0.6*MDIALO2",
-              "from": "jno2",
-              "scale by": 0.2
-           },
-           {
-              "to": "jbigald4",
-              "__reaction": "BIGALD4 + hv -> HO2 + CO + CH3COCHO + CH3CO3",
-              "from": "jno2",
-              "scale by": 0.006
-           },
-           {
-              "to": "jbzooh",
-              "__reaction": "BZOOH + hv -> BZALD + OH + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jmekooh",
-              "__reaction": "MEKOOH + hv  -> OH + CH3CO3 + CH3CHO",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jtolooh",
-              "__reaction": "TOLOOH + hv  -> OH + .45*GLYOXAL + .45*CH3COCHO + .9*BIGALD",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jterpooh",
-              "__reaction": "TERPOOH + hv  -> OH + .1*CH3COCH3 + HO2 + MVK + MACR",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jhonitr",
-              "__reaction": "HONITR + hv -> NO2 + 0.67*HO2 + 0.33*CH3CHO + 0.33*CH2O + 0.33*CO + 0.33*GLYALD + 0.33*CH3CO3 + 0.17*HYAC + 0.17*CH3COCH3",
-              "from": "jch2o_a"
-           },
-           {
-              "to": "jhpald",
-              "__reaction": "HPALD + hv -> BIGALD3 + OH + HO2",
-              "from": "jno2",
-              "scale by": 0.006
-           },
-           {
-              "to": "jisopnooh",
-              "__reaction": "ISOPNOOH + hv -> NO2 + HO2 + ISOPOOH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jnc4cho",
-              "__reaction": "NC4CHO + hv -> BIGALD3 + NO2 + HO2",
-              "from": "jch2o_a"
-           },
-           {
-              "to": "jnoa",
-              "__reaction": "NOA + hv -> NO2 + CH2O + CH3CO3",
-              "from": "jch2o_a"
-           },
-           {
-              "to": "jnterpooh",
-              "__reaction": "NTERPOOH + hv -> TERPROD1 + NO2 + OH",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jphenooh",
-              "__reaction": "PHENOOH + hv -> OH + HO2 + 0.7*GLYOXAL",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jtepomuc",
-              "__reaction": "TEPOMUC + hv -> 0.5*CH3CO3 + HO2 + 1.5*CO",
-              "from": "jno2",
-              "scale by": 0.1
-           },
-           {
-              "to": "jterp2ooh",
-              "__reaction": "TERP2OOH + hv -> OH + 0.375*CH2O + 0.3*CH3COCH3 + 0.25*CO + CO2 + TERPROD2 + HO2 + 0.25*GLYALD",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jterpnit",
-              "__reaction": "TERPNIT + hv -> TERPROD1 + NO2 + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jterprd1",
-              "__reaction": "TERPROD1 + hv -> HO2 + CO + TERPROD2",
-              "from": "jch3cho"
-           },
-           {
-              "to": "jterprd2",
-              "__reaction": "TERPROD2 + hv -> 0.15*RO2 + 0.68*CH2O + 0.8*CO2 + 0.5*CH3COCH3 + 0.65*CH3CO3 + 1.2*HO2 + 1.7*CO",
-              "from": "jch3cho"
-           },
-           {
-              "to": "jxylenooh",
-              "__reaction": "XYLENOOH + hv -> OH + HO2 + 0.34*GLYOXAL + 0.54*CH3COCHO + 0.06*BIGALD1 + 0.2*BIGALD2 + 0.15*BIGALD3 + 0.21*BIGALD4",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jxylolooh",
-              "__reaction": "XYLOLOOH + hv -> OH + 0.17*GLYOXAL + 0.51*CH3COCHO + HO2",
-              "from": "jch3ooh"
-           },
-           {
-              "to": "jsoa1_a1",
-              "__reaction": "soa1_a1 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa1_a2",
-              "__reaction": "soa1_a2 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa2_a1",
-              "__reaction": "soa2_a1 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa2_a2",
-              "__reaction": "soa2_a2 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa3_a1",
-              "__reaction": "soa3_a1 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa3_a2",
-              "__reaction": "soa3_a2 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa4_a1",
-              "__reaction": "soa4_a1 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa4_a2",
-              "__reaction": "soa4_a2 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa5_a1",
-              "__reaction": "soa5_a1 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           },
-           {
-              "to": "jsoa5_a2",
-              "__reaction": "soa5_a2 + hv -> Products",
-              "from": "jno2",
-              "scale by": 0.0004
-           }
-        ]
-     }
+      "disable aerosols": true,
+      "disable clouds": true,
+      "aliasing": {
+         "default matching": "backup",
+         "pairs": [
+            {
+               "to": "jalknit",
+               "__reaction": "ALKNIT + hv -> NO2 + 0.4*CH3CHO + 0.1*CH2O + 0.25*CH3COCH3 + HO2 + 0.8*MEK",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jpooh",
+               "__reaction": "POOH (C3H6OHOOH) + hv -> CH3CHO + CH2O + HO2 + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jch3co3h",
+               "__reaction": "CH3COOOH + hv -> CH3O2 + OH + CO2",
+               "from": "jh2o2",
+               "scale by": 0.28
+            },
+            {
+               "to": "jmpan",
+               "__reaction": "MPAN + hv -> MCO3 + NO2",
+               "from": "jpan"
+            },
+            {
+               "to": "jc2h5ooh",
+               "__reaction": "C2H5OOH + hv -> CH3CHO + HO2 + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jc3h7ooh",
+               "__reaction": "C3H7OOH + hv -> 0.82*CH3COCH3 + OH + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jc6h5ooh",
+               "__reaction": "C6H5OOH + hv -> PHENO + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jeooh",
+               "__reaction": "EOOH + hv -> EO + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jrooh",
+               "__reaction": "ROOH + hv -> CH3CO3 + CH2O + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jxooh",
+               "__reaction": "XOOH + hv -> OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jonitr",
+               "__reaction": "ONITR + hv -> NO2",
+               "from": "jch3cho"
+            },
+            {
+               "to": "jisopooh",
+               "__reaction": "ISOPOOH + hv -> 0.402*MVK + 0.288*MACR + 0.69*CH2O + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jmek",
+               "__reaction": "MEK + hv -> CH3CO3 + C2H5O2",
+               "from": "jacet"
+            },
+            {
+               "to": "jalkooh",
+               "__reaction": "ALKOOH + hv  -> .4*CH3CHO + .1*CH2O + .25*CH3COCH3 + .9*HO2 + .8*MEK + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jbenzooh",
+               "__reaction": "BENZOOH + hv -> OH + GLYOXAL + 0.5*BIGALD1 + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jbepomuc",
+               "__reaction": "BEPOMUC + hv -> BIGALD1 + 1.5*HO2 + 1.5*CO",
+               "from": "jno2",
+               "scale by": 0.1
+            },
+            {
+               "to": "jbigald",
+               "__reaction": "BIGALD + hv -> 0.45*CO + 0.13*GLYOXAL + 0.56*HO2 + 0.13*CH3CO3 + 0.18*CH3COCHO",
+               "from": "jno2",
+               "scale by": 0.2
+            },
+            {
+               "to": "jbigald1",
+               "__reaction": "BIGALD1 + hv -> 0.6*MALO2 + HO2",
+               "from": "jno2",
+               "scale by": 0.14
+            },
+            {
+               "to": "jbigald2",
+               "__reaction": "BIGALD2 + hv -> 0.6*HO2 + 0.6*DICARBO2",
+               "from": "jno2",
+               "scale by": 0.2
+            },
+            {
+               "to": "jbigald3",
+               "__reaction": "BIGALD3 + hv -> 0.6*HO2 + 0.6*CO + 0.6*MDIALO2",
+               "from": "jno2",
+               "scale by": 0.2
+            },
+            {
+               "to": "jbigald4",
+               "__reaction": "BIGALD4 + hv -> HO2 + CO + CH3COCHO + CH3CO3",
+               "from": "jno2",
+               "scale by": 0.006
+            },
+            {
+               "to": "jbzooh",
+               "__reaction": "BZOOH + hv -> BZALD + OH + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jmekooh",
+               "__reaction": "MEKOOH + hv  -> OH + CH3CO3 + CH3CHO",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jtolooh",
+               "__reaction": "TOLOOH + hv  -> OH + .45*GLYOXAL + .45*CH3COCHO + .9*BIGALD",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jterpooh",
+               "__reaction": "TERPOOH + hv  -> OH + .1*CH3COCH3 + HO2 + MVK + MACR",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jhonitr",
+               "__reaction": "HONITR + hv -> NO2 + 0.67*HO2 + 0.33*CH3CHO + 0.33*CH2O + 0.33*CO + 0.33*GLYALD + 0.33*CH3CO3 + 0.17*HYAC + 0.17*CH3COCH3",
+               "from": "jch2o_a"
+            },
+            {
+               "to": "jhpald",
+               "__reaction": "HPALD + hv -> BIGALD3 + OH + HO2",
+               "from": "jno2",
+               "scale by": 0.006
+            },
+            {
+               "to": "jisopnooh",
+               "__reaction": "ISOPNOOH + hv -> NO2 + HO2 + ISOPOOH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jnc4cho",
+               "__reaction": "NC4CHO + hv -> BIGALD3 + NO2 + HO2",
+               "from": "jch2o_a"
+            },
+            {
+               "to": "jnoa",
+               "__reaction": "NOA + hv -> NO2 + CH2O + CH3CO3",
+               "from": "jch2o_a"
+            },
+            {
+               "to": "jnterpooh",
+               "__reaction": "NTERPOOH + hv -> TERPROD1 + NO2 + OH",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jphenooh",
+               "__reaction": "PHENOOH + hv -> OH + HO2 + 0.7*GLYOXAL",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jtepomuc",
+               "__reaction": "TEPOMUC + hv -> 0.5*CH3CO3 + HO2 + 1.5*CO",
+               "from": "jno2",
+               "scale by": 0.1
+            },
+            {
+               "to": "jterp2ooh",
+               "__reaction": "TERP2OOH + hv -> OH + 0.375*CH2O + 0.3*CH3COCH3 + 0.25*CO + CO2 + TERPROD2 + HO2 + 0.25*GLYALD",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jterpnit",
+               "__reaction": "TERPNIT + hv -> TERPROD1 + NO2 + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jterprd1",
+               "__reaction": "TERPROD1 + hv -> HO2 + CO + TERPROD2",
+               "from": "jch3cho"
+            },
+            {
+               "to": "jterprd2",
+               "__reaction": "TERPROD2 + hv -> 0.15*RO2 + 0.68*CH2O + 0.8*CO2 + 0.5*CH3COCH3 + 0.65*CH3CO3 + 1.2*HO2 + 1.7*CO",
+               "from": "jch3cho"
+            },
+            {
+               "to": "jxylenooh",
+               "__reaction": "XYLENOOH + hv -> OH + HO2 + 0.34*GLYOXAL + 0.54*CH3COCHO + 0.06*BIGALD1 + 0.2*BIGALD2 + 0.15*BIGALD3 + 0.21*BIGALD4",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jxylolooh",
+               "__reaction": "XYLOLOOH + hv -> OH + 0.17*GLYOXAL + 0.51*CH3COCHO + HO2",
+               "from": "jch3ooh"
+            },
+            {
+               "to": "jsoa1_a1",
+               "__reaction": "soa1_a1 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa1_a2",
+               "__reaction": "soa1_a2 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa2_a1",
+               "__reaction": "soa2_a1 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa2_a2",
+               "__reaction": "soa2_a2 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa3_a1",
+               "__reaction": "soa3_a1 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa3_a2",
+               "__reaction": "soa3_a2 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa4_a1",
+               "__reaction": "soa4_a1 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa4_a2",
+               "__reaction": "soa4_a2 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa5_a1",
+               "__reaction": "soa5_a1 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            },
+            {
+               "to": "jsoa5_a2",
+               "__reaction": "soa5_a2 + hv -> Products",
+               "from": "jno2",
+               "scale by": 0.0004
+            }
+         ]
+      }
    }
-}
+}
\ No newline at end of file
diff --git a/src/chemistry/mozart/mo_gas_phase_chemdr.F90 b/src/chemistry/mozart/mo_gas_phase_chemdr.F90
index c894e99c74..85a3e9eec5 100644
--- a/src/chemistry/mozart/mo_gas_phase_chemdr.F90
+++ b/src/chemistry/mozart/mo_gas_phase_chemdr.F90
@@ -815,7 +815,7 @@ subroutine gas_phase_chemdr(lchnk, ncol, imozart, q, &
     call shr_orb_decl( calday, eccen, mvelpp, lambm0, obliqr  , &
          delta, esfact )
 
-    if (tuvx_active) then
+ !   if (tuvx_active) then
       !-----------------------------------------------------------------
       !	... get calculated photolysis rates from TUV-x
       !-----------------------------------------------------------------
@@ -823,14 +823,15 @@ subroutine gas_phase_chemdr(lchnk, ncol, imozart, q, &
                                  tfld, ts, invariants, vmr, col_delta, &
                                  asdir, zen_angle, esfact, pdel, cldfr,&
                                  cwat, reaction_rates(:,:,1:phtcnt) )
-    else
+reaction_rates(:,:,1:phtcnt)=0._r8
+ !   else
       !-----------------------------------------------------------------
       !	... lookup the photolysis rates from table
       !-----------------------------------------------------------------
       call table_photo( reaction_rates, pmid, pdel, tfld, zmid, zint, &
                         col_dens, zen_angle, asdir, cwat, cldfr, &
                         esfact, vmr, invariants, ncol, lchnk, pbuf )
-    endif
+  !  endif
 
     do i = 1,phtcnt
        call outfld( tag_names(i), reaction_rates(:ncol,:,rxt_tag_map(i)), ncol, lchnk )
diff --git a/src/chemistry/mozart/mo_tuvx.F90 b/src/chemistry/mozart/mo_tuvx.F90
index f7d51fd651..50d868cd18 100644
--- a/src/chemistry/mozart/mo_tuvx.F90
+++ b/src/chemistry/mozart/mo_tuvx.F90
@@ -261,7 +261,7 @@ subroutine tuvx_init( photon_file, electron_file, max_solar_zenith_angle )
     if( is_initialized ) return
     is_initialized = .true.
 
-    call die_msg( 121631567, "TUV-x is not yet ready for use in CAM" )
+    !call die_msg( 121631567, "TUV-x is not yet ready for use in CAM" )
 
     if( is_main_task ) write(iulog,*) "Beginning TUV-x Initialization"