cicd.yml

name: 'CI/CD'
on:
  workflow_dispatch:
  pull_request:
  push:
    branches:
      - 'master'
    paths:
      - 'Makefile'
      - 'source/**'
      - 'source/Bivar/**'
      - 'source/ISO_Varying_String/**'
      - 'source/gslODEInitVal2/**'
      - 'source/NSWC/**'
      - 'source/pFq/**'
      - 'source/gslSpecFuncApprox/**'
      - 'source/FFTlog/**'
      - 'perl/**'
      - 'perl/File/**'
      - 'perl/Galacticus/**'
      - 'perl/Galacticus/Launch/**'
      - 'perl/Galacticus/Constraints/**'
      - 'perl/Galacticus/Build/**'
      - 'perl/Galacticus/Build/Components/**'
      - 'perl/Galacticus/Build/Components/Classes/**'
      - 'perl/Galacticus/Build/Components/Implementations/**'
      - 'perl/Galacticus/Build/Components/Properties/**'
      - 'perl/Galacticus/Build/Components/TreeNodes/**'
      - 'perl/Galacticus/Build/Components/Hierarchy/**'
      - 'perl/Galacticus/Build/SourceTree/**'
      - 'perl/Galacticus/Build/SourceTree/Parse/**'
      - 'perl/Galacticus/Build/SourceTree/Analyze/**'
      - 'perl/Galacticus/Build/SourceTree/Process/**'
      - 'perl/Galacticus/Build/SourceTree/Process/FunctionClass/**'
      - 'perl/List/**'
      - 'perl/Sort/**'
      - 'perl/LaTeX/**'
      - 'perl/IO/**'
      - 'perl/IO/Compress/**'
      - 'perl/System/**'
      - 'perl/Fortran/**'
      - 'python/**'
      - 'scripts/build/**'
      - 'schema/**'
concurrency:
  group: cicd-${{ github.ref }}
  cancel-in-progress: true  
defaults:
  run:
    shell: bash
jobs:
  # Build and deploy
  ## Linux
  ### Static executable and test codes
  Build-Executable-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Check out repository analysis-perl
        uses: actions/checkout@v4
        with:
          repository: galacticusorg/analysis-perl
          path: analysis-perl
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_FCFLAGS=$GALACTICUS_FCFLAGS -static" >> $GITHUB_ENV
          echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          export BUILDPATH=./work/build
          set -o pipefail
          make GALACTICUS_BUILD_OPTION=compileprof -j4 all 2>&1 | tee build.log
          set +o pipefail
          chmod u=wrx ./scripts/build/buildProfiler.pl
          ./scripts/build/buildProfiler.pl build.log buildProfile.html --durationMinimum 20
          grep -vqzi error:          build.log || (echo "FAIL: errors found in build.log"          && false)
          grep -vqzi warning:        build.log || (echo "FAIL: warnings found in build.log"        && false)
          grep -vqzi 'is up to date' build.log || (echo "FAIL: 'is up to date' found in build.log" && false)
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec
          path: 'Galacticus.exe'
      - name: Upload test code executables
        uses: actions/upload-artifact@v4
        with:
          name: test-execs
          path: 'tests.*.exe'
      - name: Upload build profile
        uses: actions/upload-artifact@v4
        with:
          name: build-profile
          path: 'buildProfile.html'
      - name: Test preprocessor determinism
        run: |
          # Test that the preprocessor produces deterministic output by re-preprocessing one file and checking that the results are unchanged.
          cd $GALACTICUS_EXEC_PATH
          cp work/build/mass_distributions.p.F90 work/build/mass_distributions.p.F90.prev
          cp work/build/mass_distributions.spherical.Sersic.p.F90 work/build/mass_distributions.spherical.Sersic.p.F90.prev
          touch source/mass_distributions.spherical.Sersic.F90
          make -j16 work/build/mass_distributions.p.F90
          cmp -s work/build/mass_distributions.p.F90 work/build/mass_distributions.p.F90.prev
          cmp -s work/build/mass_distributions.spherical.Sersic.p.F90 work/build/mass_distributions.spherical.Sersic.p.F90.prev
      - run: echo "This job's status is ${{ job.status }}."
  ### Non-static executable
  Build-Executable-Linux-Non-Static:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Check out repository analysis-perl
        uses: actions/checkout@v4
        with:
          repository: galacticusorg/analysis-perl
          path: analysis-perl
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          export BUILDPATH=./work/build
          set -o pipefail
          make -j4 Galacticus.exe 2>&1 | tee build.log
          set +o pipefail
          ! grep -n Error: build.log
          ! grep -n Warning: build.log
          ! grep -v 'is up to date' build.log | grep -n -C 5 make:
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec-non-static
          path: 'Galacticus.exe'
      - run: echo "This job's status is ${{ job.status }}."
  ### Executable instrumented
  Build-Executables-Instrumented-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          export GALACTICUS_FCFLAGS="$GALACTICUS_FCFLAGS -pg"
          export GALACTICUS_CFLAGS="$GALACTICUS_CFLAGS -pg"
          export GALACTICUS_CPPFLAGS="$GALACTICUS_CPPFLAGS -pg"
          make -j4 Galacticus.exe
      - name: Upload executables
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec-instrumented
          path: 'Galacticus.exe'
      - run: echo "This job's status is ${{ job.status }}."
  ### Executable MPI
  Build-Executables-MPI-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          make -j4 GALACTICUS_BUILD_OPTION=MPI Galacticus.exe tests.MPI.exe tests.radiative_transfer.atomic_matter.state_solver.exe
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec-MPI
          path: 'Galacticus.exe'
      - name: Upload test code executables
        uses: actions/upload-artifact@v4
        with:
          name: test-execs-MPI
          path: 'tests.*.exe'
      - run: echo "This job's status is ${{ job.status }}."
  ### Executable debugging
  Build-Executables-Debugging-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
          echo "GALACTICUS_FCFLAGS+=\ -DDEBUGGING" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          make -j4 Galacticus.exe tests.debugging.exe
      - name: Upload test code executables
        uses: actions/upload-artifact@v4
        with:
          name: test-execs-debugging
          path: 'tests.*.exe'
      - run: echo "This job's status is ${{ job.status }}."
  ### Library
  Build-Library-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
      - name: Build the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          make -j4 GALACTICUS_BUILD_OPTION=lib libgalacticus.so
      - name: Package the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          mkdir galacticus
          mkdir galacticus/lib
          mkdir galacticus/python
          # Find all dynamic libraries needed (filtering out some system libs) and copy to our folder.
          ldd libgalacticus.so | awk '{if (NF == 4) print $3}' | grep -v -e /libc.so -e /libdl.so -e /libm.so -e /libpthread.so -e /librt.so | xargs -n 1 -i{} cp {} galacticus/lib/
          mv galacticus.py galacticus/python/
          mv libgalacticus.so galacticus/lib/
          tar cvfj libgalacticus.tar.bz2 galacticus
      - name: Upload library
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-library
          path: 'libgalacticus.tar.bz2'
      - run: echo "This job's status is ${{ job.status }}."
  ### Docker image
  Build-Docker-Linux:
    runs-on: ubuntu-latest
    permissions:
      packages: write
    steps:
      - name: "Detect PR build"
        id: detectBranch
        run: |
          if [[ "${{ github.event_name }}" == "pull_request" ]]; then
             echo Running on a PR - will build, but not push
             echo "doPush=false" >> "$GITHUB_OUTPUT"
          else
             echo Running on a non-PR - will build and push
             echo "doPush=true"  >> "$GITHUB_OUTPUT"
          fi
      - name: Login to GitHub Container Registry
        uses: docker/login-action@v3
        with:
          registry: ghcr.io
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}
      - name: Extract metadata (tags, labels) for Docker
        id: meta
        uses: docker/metadata-action@v5
        with:
          images: galacticusorg/galacticus
      - name: Build and push Docker image 
        uses: docker/build-push-action@v6
        with:
          push: ${{ steps.detectBranch.outputs.doPush }}
          tags: ghcr.io/galacticusorg/galacticus:latest
          labels: ${{ steps.meta.outputs.labels }}
          build-args: |
            BRANCH=${{ github.head_ref || github.ref_name }}          
  ### Documentation
  Build-Documentation-Linux:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
      - name: Build the docs
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          ./scripts/doc/Build_Documentation.sh -f yes -p 2
      - name: Upload docs
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-docs
          path: |
            ./doc/Galacticus_Usage.pdf
            ./doc/Galacticus_Physics.pdf
            ./doc/Galacticus_Development.pdf
            ./doc/Galacticus_Source.pdf
      - run: echo "This job's status is ${{ job.status }}."
  ### Tools
  Build-Tools:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    needs: Build-Executable-Linux
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Check out repository datasets
        uses: actions/checkout@v4      
        with:
          repository: galacticusorg/datasets
          path: datasets
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV
          echo "GALACTICUS_FCFLAGS+=\ -static" >> $GITHUB_ENV
      - name: Download executables
        uses: actions/download-artifact@v4
        with:
          name: galacticus-exec
      - name: Build tools
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          mkdir -p $GALACTICUS_DATA_PATH/dynamic
          chmod u=wrx ./Galacticus.exe
          ./Galacticus.exe parameters/buildTools.xml
          cd $GALACTICUS_DATA_PATH
          classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          mangleVersion=`awk '{if ($1 == "mangle:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          # Check that executables were statically linked
          ! ldd dynamic/CAMB-${cambVersion}/fortran/camb
          ! ldd dynamic/AxionCAMB/camb
          ! ldd dynamic/class_public-${classVersion}/class
          ! ldd dynamic/RecFast/recfast.exe
          ! ldd dynamic/fsps-${fspsVersion}/src/autosps.exe
          ! ldd dynamic/mangle-${mangleVersion}/bin/ransack
          tar cfj tools.tar.bz2 \
            dynamic/CAMB-${cambVersion}/fortran/camb \
            dynamic/AxionCAMB/camb \
            dynamic/class_public-${classVersion}/class \
            dynamic/RecFast/recfast.exe \
            dynamic/RecFast/currentVersion \
            dynamic/c${cloudyVersion}/source/cloudy.exe \
            dynamic/c${cloudyVersion}/data \
            dynamic/fsps-${fspsVersion}/src/autosps.exe \
            dynamic/fsps-${fspsVersion}/dust \
            dynamic/fsps-${fspsVersion}/data \
            dynamic/fsps-${fspsVersion}/nebular \
            dynamic/fsps-${fspsVersion}/SPECTRA \
            dynamic/fsps-${fspsVersion}/OUTPUTS \
            dynamic/fsps-${fspsVersion}/ISOCHRONES \
            dynamic/mangle-${mangleVersion}/bin/harmonize
      - name: Upload tools
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-tools
          path: ./datasets/tools.tar.bz2
      - run: echo "This job's status is ${{ job.status }}."
  ## MacOS
  ### Static executable
  Build-Executable-MacOS:
    runs-on: macos-13
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: Build Galacticus
        run: |
          set -o pipefail
          make -j`sysctl -n hw.activecpu` USEGIT2=no Galacticus.exe tests.hashes.cryptographic.exe 2>&1 | tee build.log
          ./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log`
          ./scripts/build/staticRelinker.pl `grep '\-o tests.hashes.cryptographic.exe' build.log`
          dsymutil -o Galacticus.exe.dSYM Galacticus.exe
          zip -r debugSymbolsMacOS.zip Galacticus.exe.dSYM
          mv Galacticus.exe Galacticus_MacOS.exe
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec-MacOS
          path: 'Galacticus_MacOS.exe'
      - name: Upload test code executables
        uses: actions/upload-artifact@v4
        with:
          name: test-execs-MacOS
          path: 'tests.*.exe'
      - name: Upload Galacticus debug symbols
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-debug-MacOS
          path: 'debugSymbolsMacOS.zip'
  ### Apple Silicon build  
  Build-Executable-MacOS-M1:
    runs-on: macos-14
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: Build Galacticus
        run: |
          set -o pipefail
          make -j`sysctl -n hw.activecpu` USEGIT2=no Galacticus.exe 2>&1 | tee build.log
          ./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log`
          dsymutil -o Galacticus.exe.dSYM Galacticus.exe
          zip -r debugSymbolsMacOS-M1.zip Galacticus.exe.dSYM
          mv Galacticus.exe Galacticus_MacOS-M1.exe
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-exec-MacOS-M1
          path: 'Galacticus_MacOS-M1.exe'
      - name: Upload Galacticus debug symbols
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-debug-MacOS-M1
          path: 'debugSymbolsMacOS-M1.zip'
  ## Library
  Build-Library-MacOS:
    runs-on: macos-13
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: Build Galacticus
        run: |
          make -j`sysctl -n hw.activecpu` USEGIT2=no GALACTICUS_BUILD_OPTION=lib libgalacticus.so
      - name: Package the code
        run: |
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          mkdir galacticus
          mkdir galacticus/lib
          mkdir galacticus/python
          # Find all dynamic libraries needed (filtering out any non-"local" ones) and copy to our folder.
          otool -L libgalacticus.so | awk '{if (NR > 1) print $1}' | grep -e /usr/local -e /opt/local | xargs -n 1 -I{} cp {} galacticus/lib/
          mv galacticus.py galacticus/python/
          mv libgalacticus.so galacticus/lib/
          zip -r libgalacticusMacOS.zip galacticus
      - name: Upload library
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-library-MacOS
          path: 'libgalacticusMacOS.zip'
  ### Tools
  Build-Tools-MacOS:
    runs-on: macos-13
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Check out repository datasets
        uses: actions/checkout@v4      
        with:
          repository: galacticusorg/datasets
          path: datasets
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: Build Galacticus
        run: |
          make -j`sysctl -n hw.activecpu` USEGIT2=no Galacticus.exe
      - name: Build tools
        run: |
          export GALACTICUS_EXEC_PATH=`pwd`
          export FCCOMPILER=gfortran-11
          export CCOMPILER=gcc-11
          export CPPCOMPILER=g++-11
          export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib"
          export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
          export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include"
          classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          mangleVersion=`awk '{if ($1 == "mangle:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          mkdir -p $GALACTICUS_DATA_PATH/dynamic
          set -o pipefail
          ./Galacticus.exe parameters/buildTools.xml 2>&1 | tee build.log
          cd $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion}/fortran/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -cpp -Ofast -fopenmp -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib -JRelease -IRelease/ -I"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" Release/inidriver.o Release/libcamb.a  -L"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" -lforutils -o camb
          cd $GALACTICUS_DATA_PATH/dynamic/AxionCAMB/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -O3 -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib constants.o utils.o  subroutines.o inifile.o power_tilt.o recfast_axion.o reionization.o modules.o bessels.o equations_ppf.o halofit_ppf.o lensing.o SeparableBispectrum.o cmbmain.o camb.o axion_background.o inidriver_axion.F90 -o camb          
          cd $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion}/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o class ' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/RecFast/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 recfast.for -o recfast.exe -O3 -ffixed-form -ffixed-line-length-none
          cd $GALACTICUS_DATA_PATH/dynamic/c${cloudyVersion}/source/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o cloudy.exe' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion}/src
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o autosps.exe' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/mangle-${mangleVersion}/bin/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o harmonize' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH
          zip -r toolsMacOS.zip \
            dynamic/CAMB-${cambVersion}/fortran/camb \
            dynamic/AxionCAMB/camb \
            dynamic/class_public-${classVersion}/class \
            dynamic/RecFast/recfast.exe \
            dynamic/RecFast/currentVersion \
            dynamic/c${cloudyVersion}/source/cloudy.exe \
            dynamic/c${cloudyVersion}/data \
            dynamic/fsps-${fspsVersion}/src/autosps.exe \
            dynamic/fsps-${fspsVersion}/dust \
            dynamic/fsps-${fspsVersion}/data \
            dynamic/fsps-${fspsVersion}/nebular \
            dynamic/fsps-${fspsVersion}/SPECTRA \
            dynamic/fsps-${fspsVersion}/OUTPUTS \
            dynamic/fsps-${fspsVersion}/ISOCHRONES \
            dynamic/mangle-${mangleVersion}/bin/harmonize
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-tools-MacOS
          path: './datasets/toolsMacOS.zip'
      - run: echo "This job's status is ${{ job.status }}."
  Build-Tools-MacOS-M1:
    runs-on: macos-14
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Check out repository datasets
        uses: actions/checkout@v4      
        with:
          repository: galacticusorg/datasets
          path: datasets
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: Build Galacticus
        run: |
          make -j`sysctl -n hw.activecpu` USEGIT2=no Galacticus.exe 2>&1 | tee build.log
          ./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log`
      - name: Build tools
        run: |
          export GALACTICUS_EXEC_PATH=`pwd`
          export FCCOMPILER=gfortran-11
          export CCOMPILER=gcc-11
          export CPPCOMPILER=g++-11
          export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib"
          export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
          export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include"
          classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          mangleVersion=`awk '{if ($1 == "mangle:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml`
          cd $GALACTICUS_EXEC_PATH
          git config --global --add safe.directory $GALACTICUS_EXEC_PATH
          mkdir -p $GALACTICUS_DATA_PATH/dynamic
          set -o pipefail
          ./Galacticus.exe parameters/buildTools.xml 2>&1 | tee build.log
          cd $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion}/fortran/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -cpp -Ofast -fopenmp -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib -JRelease -IRelease/ -I"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" Release/inidriver.o Release/libcamb.a  -L"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" -lforutils -o camb
          cd $GALACTICUS_DATA_PATH/dynamic/AxionCAMB/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -O3 -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib constants.o utils.o  subroutines.o inifile.o power_tilt.o recfast_axion.o reionization.o modules.o bessels.o equations_ppf.o halofit_ppf.o lensing.o SeparableBispectrum.o cmbmain.o camb.o axion_background.o inidriver_axion.F90 -o camb          
          cd $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion}/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o class ' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/RecFast/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 recfast.for -o recfast.exe -O3 -ffixed-form -ffixed-line-length-none
          cd $GALACTICUS_DATA_PATH/dynamic/c${cloudyVersion}/source/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o cloudy.exe' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion}/src
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o autosps.exe' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH/dynamic/mangle-${mangleVersion}/bin/
          $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o harmonize' $GALACTICUS_EXEC_PATH/build.log`
          cd $GALACTICUS_DATA_PATH
          zip -r toolsMacOSM1.zip \
            dynamic/CAMB-${cambVersion}/fortran/camb \
            dynamic/AxionCAMB/camb \
            dynamic/class_public-${classVersion}/class \
            dynamic/RecFast/recfast.exe \
            dynamic/RecFast/currentVersion \
            dynamic/c${cloudyVersion}/source/cloudy.exe \
            dynamic/c${cloudyVersion}/data \
            dynamic/fsps-${fspsVersion}/src/autosps.exe \
            dynamic/fsps-${fspsVersion}/dust \
            dynamic/fsps-${fspsVersion}/data \
            dynamic/fsps-${fspsVersion}/nebular \
            dynamic/fsps-${fspsVersion}/SPECTRA \
            dynamic/fsps-${fspsVersion}/OUTPUTS \
            dynamic/fsps-${fspsVersion}/ISOCHRONES \
            dynamic/mangle-${mangleVersion}/bin/harmonize
      - name: Upload Galacticus executable
        uses: actions/upload-artifact@v4
        with:
          name: galacticus-tools-MacOS-M1
          path: './datasets/toolsMacOSM1.zip'
      - run: echo "This job's status is ${{ job.status }}."
  # Benchmarks
  Benchmark-Dark-Matter-Only-Subhalos:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: benchmark-darkMatterOnlySubhalos.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 0
      install: time
      uploadFile: testSuite/outputs/benchmark_darkMatterOnlySubhalos.json
      uploadName: benchmark-darkMatterOnlySubhalos
    secrets: inherit
  Benchmark-Milky-Way-Model:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: benchmark-milkyWay.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 1
      install: time
      uploadFile: testSuite/outputs/benchmark_milkyWayModel.json
      uploadName: benchmark-milkyWayModel
    secrets: inherit
  # Profiling
  Profile-Dark-Matter-Only-Subhalos:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: perf
      cacheData: 0
      name: darkMatterOnlySubHalos
      frequency: 500
    secrets: inherit
  Profile-Milky-Way-Model:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: perf
      cacheData: 1
      name: milkyWay
      frequency: 100
    secrets: inherit
  Profile-Milky-Way-SIDM-Model:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: perf
      cacheData: 1
      name: milkyWay_SIDM
      frequency: 100
    secrets: inherit
  Profile-Dark-Matter-Only-Subhalos-GProf:
    needs: Build-Executables-Instrumented-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: gprof
      cacheData: 0
      name: darkMatterOnlySubHalos
    secrets: inherit
  Profile-Milky-Way-GProf:
    needs: Build-Executables-Instrumented-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: gprof
      cacheData: 1
      name: milkyWay
  Profile-Milky-Way-SIDM-GProf:
    needs: Build-Executables-Instrumented-Linux
    uses: ./.github/workflows/profile.yml
    with:
      profiler: gprof
      cacheData: 1
      name: milkyWay_SIDM
  # Validation
  Validate-Dark-Matter-Only-Subhalos:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: python3 python3-h5py python3-numpy python3-git
      file: validate-darkMatterOnlySubhalos.py
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 0
      uploadFile: ./testSuite/outputs/*.json
      uploadName: validate-darkMatterOnlySubhalos
    secrets: inherit
  Validate-Milky-Way-Model:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: python3 python3-h5py python3-numpy python3-git
      file: validate-milkyWay.py
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 1
      uploadFile: ./testSuite/outputs/*.json
      uploadName: validate-milkyWayModel
    secrets: inherit
  Validate-PonosV:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: python3 python3-h5py python3-numpy python3-git
      file: validate-PonosV.py
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 0
      uploadFile: ./testSuite/outputs/*.json
      uploadName: validate-PonosV
    secrets: inherit
  Validate-Baryonic-Suppression:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: python3 python3-h5py python3-numpy python3-git
      file: validate-baryonicSuppression.py
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 0
      uploadFile: ./testSuite/outputs/*.json
      uploadName: validate-baryonicSuppression
    secrets: inherit
  Validate-Idealized-Subhalo-Simulations:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: python3 python3-h5py python3-numpy python3-git
      file: validate-idealizedSubhaloSimulations.py
      artifact: galacticus-exec
      runPath: ./testSuite
      cacheData: 0
      uploadFile: ./testSuite/outputs/*.json
      uploadName: validate-idealizedSubhaloSimulations
    secrets: inherit
  # Tests
  ## Linux
  ### Test Codes
  Codes:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        executable: [ tests.nodes.exe,
                      tests.parameters.exe,
                      tests.files.exe,
                      tests.IO.XML.exe,
                      tests.ODE_solver.exe,
                      tests.random.exe,
                      tests.random.quasi.exe,
                      tests.arrays.exe,
                      tests.meshes.exe,
                      tests.convex_hulls.exe,
                      tests.comparisons.exe,
                      tests.geometry.coordinate_systems.exe,
                      tests.hashes.exe,
                      tests.hashes.perfect.exe,
                      tests.regular_expressions.exe,
                      tests.hashes.cryptographic.exe,
                      tests.integration.exe,
                      tests.integration2.exe,
                      tests.differentiation.exe,
                      tests.tables.exe,
                      tests.interpolation.exe,
                      tests.interpolation.2D.exe,
                      tests.make_ranges.exe,
                      tests.mass_distributions.exe,
                      tests.math_special_functions.exe,
                      tests.math_distributions.exe,
                      tests.math.fast.exe,
                      tests.math.arithmetic.exe,
                      tests.math.linear_algebra.exe,
                      tests.root_finding.exe,
                      tests.multi_dimensional_minimizer.exe,
                      tests.search.exe,
                      tests.Roman_numerals.exe,
                      tests.SI_prefixes.exe,
                      tests.sort.exe,
                      tests.sort.topological.exe,
                      tests.string_utilities.exe,
                      tests.vectors.exe,
                      tests.multi_counters.exe,
                      tests.tensors.exe,
                      tests.cosmic_age.exe,
                      tests.spherical_collapse.open.exe,
                      tests.spherical_collapse.flat.exe,
                      tests.spherical_collapse.dark_energy.EdS.exe,
                      tests.spherical_collapse.dark_energy.open.exe,
                      tests.spherical_collapse.dark_energy.lambda.exe,
                      tests.spherical_collapse.dark_energy.constantEoSminusHalf.exe,
                      tests.spherical_collapse.dark_energy.constantEoSminusTwoThirds.exe,
                      tests.spherical_collapse.dark_energy.constantEoSminus0.6.exe,
                      tests.spherical_collapse.dark_energy.constantEoSminus0.8.exe,
                      tests.spherical_collapse.baryons_dark_matter.exe,
                      tests.spherical_collapse.nonlinear.exe,
                      tests.warm_dark_matter.exe,
                      tests.linear_growth.cosmological_constant.exe,
                      tests.linear_growth.EdS.exe,
                      tests.linear_growth.open.exe,
                      tests.linear_growth.dark_energy.exe,
                      tests.linear_growth.baryons.EdS.exe,
                      tests.halo_mass_function.Tinker.exe,
                      tests.halo_mass_function.Reed2007.exe,
                      tests.halo_mass_function.environment_averaged.exe,
                      tests.comoving_distance.exe,
                      tests.mass_accretion_history.Correa2015.exe,
                      tests.Zhao2009_algorithms.dark_energy.exe,
                      tests.Zhao2009_algorithms.EdS.exe,
                      tests.Zhao2009_algorithms.open.exe,
                      tests.NFW96_concentration.dark_energy.exe,
                      tests.Prada2011_concentration.exe,
                      tests.DiemerKravtsov2014_concentration.exe,
                      tests.concentration.Correa2015.exe,
                      tests.concentrations.exe,
                      tests.biases.exe,
                      tests.kepler_orbits.exe,
                      tests.abundances.exe,
                      tests.sigma.exe,
                      tests.power_spectrum.primordial.exe,
                      tests.power_spectrum.exe,
                      tests.transfer_functions.exe,
                      tests.black_hole_fundamentals.exe,
                      tests.bug745815.exe,
                      tests.gaunt_factors.exe,
                      tests.cooling_functions.exe,
                      tests.accretion_disks.exe,
                      tests.mass_accretion_history.Hearin2021.exe,
                      tests.mass_accretion_history.Hearin2021_stochastic.exe,
                      tests.dark_matter_profiles.exe,
                      tests.dark_matter_profiles.projected.exe,
                      tests.dark_matter_profiles.adiabaticGnedin2004.exe,
                      tests.dark_matter_profiles.heated.exe,
                      tests.dark_matter_halo_radius_enclosing_mass.exe,
                      tests.dark_matter_profiles.tidal_tracks.exe,
                      tests.dark_matter_profiles.generic.exe,
                      tests.dark_matter_profiles.finite_resolution.exe,
                      tests.dark_matter_profiles.Zhao1996.exe,
                      tests.spectra.postprocess.Inoue2014.exe,
                      tests.recombination_computed.exe,
                      tests.recombination_cooling.Hummer.exe,
                      tests.locks.exe,
                      tests.initial_mass_functions.exe,
                      tests.stellar_populations.exe,
                      tests.stellar_populations.luminosities.exe,
                      tests.excursion_sets.exe,
                      tests.merger_tree_branching.exe,
                      tests.event_hooks.exe,
                      tests.tree_branch_destroy.exe,
                      tests.binary_search_trees.exe,
                      tests.orbits.exe,
                      tests.debugging.exe,
                      tests.hashes.cryptographic.exe ]
    uses: ./.github/workflows/testCode.yml
    with:
      executable: ${{ matrix.executable }}
      artifact: test-execs
    secrets: inherit
  ### Test HDF5 IO
  IO-HDF5:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testCode.yml
    with:
      executable: tests.IO.HDF5.exe
      artifact: test-execs
      requirePython: 1
    secrets: inherit
  ### Test Crash
  Crash:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testCode.yml
    with:
      executable: tests.crash.exe
      artifact: test-execs
      expectCrash: 1
    secrets: inherit
  ### Test Fail
  Fail:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testCode.yml
    with:
      executable: tests.fail.exe
      artifact: test-execs
      expectFail: 1
    secrets: inherit
  ### MPI Test Codes
  Codes-MPI:
    needs: Build-Executables-MPI-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        executable: [ tests.MPI.exe,
                      tests.radiative_transfer.atomic_matter.state_solver.exe ]
    uses: ./.github/workflows/testCode.yml
    with:
      executable: ${{ matrix.executable }}
      artifact: test-execs-MPI
      mpi: 1
    secrets: inherit
  ### Debugging Test Codes
  Codes-Debugging:
    needs: Build-Executables-Debugging-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        executable: [ tests.debugging.exe ]
    uses: ./.github/workflows/testCode.yml
    with:
      executable: ${{ matrix.executable }}
      artifact: test-execs-debugging
    secrets: inherit
  ### Cosmology
  Cosmology:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:2", "2:2" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-cosmology.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}"
    secrets: inherit
  ### Mass Conservation
  Mass-Conservation:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ "test-mass-conservation-simple.pl", "test-mass-conservation-standard.pl", "test-mass-conservation-coldMode.pl" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4"
    secrets: inherit
  ### Merger Trees
  Merger-Tree-Builder:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:4", "2:4", "3:4", "4:4" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-merger-tree-builder.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}"
    secrets: inherit
  Merger-Tree-Write:
    needs: Build-Executable-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-merger-tree-write.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4"
      needsIRATE: 1
    secrets: inherit
  ## Model Integration
  Model-Integration:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:2", "2:2" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-model-integration.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}"
    secrets: inherit
  ## Misc Models
  Miscellaneous:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ test-allowed-parameters.pl,
                test-bar-instability.pl,
                test-transfer-functions-axion.pl,
                test-mass-definitions.pl,
                test-branchlessTrees.pl,
                test-branchSubsampling.pl,
                test-CGM-mass-cooled.pl,
                test-concentration-Ludlow2016.pl,
                test-concentration-Johnson2021.pl,
                test-tidallyTruncatedNFWFit.pl,
                test-constraint-deterministic-spins.pl,
                test-constraint-mass-function.pl,
                test-extract-directives.pl,
                test-fortran-utils.pl,
                test-halo-mass-functions.py,
                test-inactive_luminosities.pl,
                test-interoutput-star-formation-rate.pl,
                test-mass-host-maximum.pl,
                test-noninstantaneous-recycling.pl,
                test-satellite-distance-minimum.pl,
                test-treeFilterLabels.pl,
                test-output.pl,
                test-output-times.pl,
                test-output-tree-contiguousity.pl,
                test-outputSelector.pl,
                test-parameter-validation.pl,
                test-perl-modules.pl,
                test-reproducibility.pl,
                test-splitForests.pl,
                test-parameters-diff.py,
                test-parameters-extract.py,
                test-output-datasets-suffixes.py,
                test-star-formation-histories.py,
                test-star-formation-histories-adaptive.py,
                test-star-formation-histories-inSitu.py,
                test-star-formation-histories-fixedAge.py,
                test-mostMassiveProgenitorIsSubhalo.py,
                test-lightcone-crossing.py,
                test-massProfileSatelliteBoundMass.py,
                test-UniverseMachine.py,
                test-spheroid-power-law.py,
                test-stateRestore.pl,
                test-checkpointing.pl,
                test-stellar-mass-weighted-ages.pl,
                test-tidalTracks.pl,
                test-transferFunctionHalfModeSlope.pl,
                test-galacticStructureStateDeallocateBug.pl,
                test-inactiveNumerics.pl,
                test-impulsiveHeating.pl,
                test-haloTriaxiality.pl,
                test-parallelTreeBuild.pl,
                test-duplicatedOutputPropertyName.pl ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      runPath: ./testSuite
    secrets: inherit
  Miscellaneous-IRATE:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ test-Bolshoi-tree-builder.pl,
                test-Millennium-tree-builder.pl ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      install: python3 python3-h5py python3-numpy
      runPath: ./testSuite
      needsIRATE: 1
    secrets: inherit
  Miscellaneous-Deep:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ test-parameter-migration.pl ]
    uses: ./.github/workflows/testModel.yml
    with:
      fetchDepth: 0
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      runPath: ./testSuite
    secrets: inherit
  Miscellaneous-Cached:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ test-constrained-merger-trees.pl ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      cacheData: 1
      runPath: ./testSuite
    secrets: inherit
  Miscellaneous-Models:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ testSuite/parameters/mergerTreeEvolverThreaded.xml,
                testSuite/parameters/constrainedMilkyWay.xml ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
    secrets: inherit
  ### Outputs
  Outputs:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:10", "2:10", "3:10", "4:10", "5:10", "6:10", "7:10", "8:10", "9:10", "10:10" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-outputs.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}"
    secrets: inherit
  ### Regressions
  Regressions:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ testSuite/regressions/bug1066052.pl,
                testSuite/regressions/adaptiveSFHLengths.py,
                testSuite/regressions/mergerTreeBoxSizeWeight.pl,
                testSuite/regressions/satellitePresetBoundMassNonZero.pl,
                testSuite/regressions/setProperties.pl,
                testSuite/regressions/cosmicEmu.pl,
                testSuite/regressions/bug1053153.xml,
                testSuite/regressions/bug711424.xml,
                testSuite/regressions/bug725315.xml,
                testSuite/regressions/coincidentMergerAndBranchJump.xml,
                testSuite/regressions/deadlockMergeTargetInDescendentOfMergee2.xml,
                testSuite/regressions/deadlockMergeTargetInDescendentOfMergee.xml,
                testSuite/regressions/finalTimeBeforeOutputTime.xml,
                testSuite/regressions/immediateSubSubMergerThenBranchJump.xml,
                testSuite/regressions/initialSatelliteNoPrimaryProgenitor.xml,
                testSuite/regressions/linearGrowthForFutureModel.xml,
                testSuite/regressions/ludlowScaleSetBeforeTreeInitialization.xml,
                testSuite/regressions/mergerAtFinalTimeInTree.xml,
                testSuite/regressions/particulate.xml,
                testSuite/regressions/subhaloMergesAtFinalTimeOfTree.xml,
                testSuite/regressions/subhaloTwoConsecutiveMergers.xml,
                testSuite/regressions/treeWithInitialSatelliteInProgenitorlessHost.xml,
                testSuite/regressions/treeWithNoPrimaryProgenitor.xml,
                testSuite/regressions/preInfallEvolutionNotOnMainBranch.xml,
                testSuite/regressions/outputRank2ExtendSegFault.xml,
                testSuite/regressions/barInstabilityFPE.xml,
                testSuite/regressions/haloMassFunctionWDMIndeterminateCollapseTime.xml,
                testSuite/regressions/lightconeCrossingTests.xml,
                testSuite/regressions/lightconeCrossingTestsSubresolutionMerging.xml,
                testSuite/regressions/lightconeCrossingAtCurrentTime.xml ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
    secrets: inherit
  Regressions-Cached:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        file: [ testSuite/regressions/cole2000TreeBuilderWDMNodeWellOrdering.xml,
                testSuite/regressions/issue142.xml ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: ${{ matrix.file }}
      artifact: galacticus-exec
      cacheData: 1
    secrets: inherit
  ### Methods
  Methods:
    needs: Build-Executable-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:20", "2:20", "3:20", "4:20", "5:20", "6:20", "7:20", "8:20", "9:20", "10:20", "11:20", "12:20", "13:20", "14:20", "15:20", "16:20", "17:20", "18:20", "19:20", "20:20" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-methods.pl
      artifact: galacticus-exec
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}"
    secrets: inherit
  ### MPI Misc Models
  MPI-State-Restore:
    needs: Build-Executables-MPI-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-stateRestore_MPI.pl
      artifact: galacticus-exec-MPI
      runPath: ./testSuite
      options: --processesPerNode 8 --allow-run-as-root yes
    secrets: inherit
  MPI-Radiative-Transfer-Stromgren-Sphere:
    needs: Build-Executables-MPI-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-radiativeTransfer-StromgrenSphere_MPI.pl
      artifact: galacticus-exec-MPI
      runPath: ./testSuite
      options: --processesPerNode 4 --allow-run-as-root yes
    secrets: inherit
  MPI-MCMC:
    needs: Build-Executables-MPI-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      file: parameters/tutorials/mcmcConfig.xml
      artifact: galacticus-exec-MPI
      mpi: 1
      processesPerNode: 4
    secrets: inherit
  ### MPI Methods  
  Methods-MPI:
    needs: Build-Executables-MPI-Linux
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        instance: [ "1:2", "2:2" ]
    uses: ./.github/workflows/testModel.yml
    with:
      file: test-methods_MPI.pl
      artifact: galacticus-exec-MPI
      runPath: ./testSuite
      options: "--launchMethod local --threadMaximum 1 --ompThreads 1 --instance ${{ matrix.instance }}"
    secrets: inherit
  ### Memory leaks (non-MPI)
  Memory-Leaks:
    needs: Build-Executable-Linux-Non-Static
    uses: ./.github/workflows/testModel.yml
    with:
      install: valgrind
      file: test-memory-leaks.pl
      artifact: galacticus-exec-non-static
      runPath: ./testSuite
      options: --mpi 0
    secrets: inherit
  ### Memory leaks (MPI)
  Memory-Leaks-MPI:
    needs: Build-Executables-MPI-Linux
    uses: ./.github/workflows/testModel.yml
    with:
      install: valgrind
      file: test-memory-leaks.pl
      artifact: galacticus-exec-MPI
      runPath: ./testSuite
      options: --mpi 1
    secrets: inherit
  ## Python Interface
  Python-Interface:
    runs-on: ubuntu-latest
    container: ghcr.io/galacticusorg/buildenv:latest
    needs: Build-Library-Linux
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - run: echo "The ${{ github.repository }} repository has been cloned to the runner."
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV
      - name: Install Python
        run: |
          apt -y update && apt -y upgrade
          apt -y install python3
      - name: Download library
        uses: actions/download-artifact@v4
        with:
          name: galacticus-library
      - name: Test interface
        run: |
          tar xvfj libgalacticus.tar.bz2
          python3 testSuite/test-Python-interface.py
      - run: echo "This job's status is ${{ job.status }}."
  ## MacOS
  ### Test Codes
  Codes-MacOS:
    needs: Build-Executable-MacOS
    strategy:
      # Ensure all jobs are run, even if some fail.
      fail-fast: false
      matrix:
        executable: [ tests.hashes.cryptographic.exe ]
    uses: ./.github/workflows/testCode.yml
    with:
      runner: macos-13
      executable: ${{ matrix.executable }}
      artifact: test-execs-MacOS
    secrets: inherit
  ### Test Python Interface
  Python-Interface-MacOS:
    runs-on: macos-13
    steps:
      - run: echo "The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "This job is now running on a ${{ runner.os }} server."
      - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}."
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Set up build environment
        uses: ./.github/actions/buildMacOS
      - name: "Set environmental variables"
        run: |
          echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV
          echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV
      - name: Install Python
        run: |
          sudo port install python312
          sudo port select --set python python312
          sudo port select --set python3 python312
      - name: Build Galacticus
        run: |
          make -j`sysctl -n hw.activecpu` USEGIT2=no GALACTICUS_BUILD_OPTION=lib libgalacticus.so
          mkdir galacticus
          mkdir galacticus/lib
          mkdir galacticus/python
          mv galacticus.py galacticus/python/
          mv libgalacticus.so galacticus/lib/
      - name: Test interface
        run: |
          python3 testSuite/test-Python-interface.py
      - run: echo "This job's status is ${{ job.status }}."
  # Validate, deploy and update
  Validate:
    runs-on: ubuntu-latest
    needs: [ Benchmark-Dark-Matter-Only-Subhalos, Benchmark-Milky-Way-Model, Validate-Dark-Matter-Only-Subhalos, Validate-Milky-Way-Model, Validate-PonosV, Validate-Baryonic-Suppression, Validate-Idealized-Subhalo-Simulations ]
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: 'Dark matter-only subhalos benchmarks'
        uses: ./.github/actions/benchmark
        with:
          name: 'Dark matter-only subhalos benchmarks'
          type: 'benchmark'
          suffix: 'darkMatterOnlySubhalos'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Milky Way model benchmarks'
        uses: ./.github/actions/benchmark
        with:
          name: 'Milky Way model benchmarks'
          type: 'benchmark'
          suffix: 'milkyWayModel'
          threshold: '140%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Dark matter-only subhalos validation'
        uses: ./.github/actions/benchmark
        with:
          name: 'Dark matter-only subhalos benchmarks'
          type: 'validate'
          suffix: 'darkMatterOnlySubhalos'
          threshold: '125%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Milky Way model validation'
        uses: ./.github/actions/benchmark
        with:
          name: 'Milky Way model benchmarks'
          type: 'validate'
          suffix: 'milkyWayModel'
          threshold: '240%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.005; γ=1.5)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.005; γ=1.5)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.005_gamma1.5'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.01; γ=1.5)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.01; γ=1.5)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.01_gamma1.5'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.05; γ=0.5)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.05; γ=0.5)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.05_gamma0.5'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.05; γ=1.0)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.05; γ=1.0)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.05_gamma1.0'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=0.0)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=0.0)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.2_gamma0.0'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=0.5)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=0.5)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.2_gamma0.5'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=1.0)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.2; γ=1.0)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.2_gamma1.0'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: 'Idealized subhalo simulations (rₚ/rₐ=0.4; γ=0.0)'
        uses: ./.github/actions/benchmark
        with:
          name: 'Idealized subhalo simulations (rₚ/rₐ=0.4; γ=0.0)'
          type: 'validate'
          artifact: 'validate-idealizedSubhaloSimulations'
          suffix: 'idealizedSubhaloSimulation_rpra0.4_gamma0.0'
          threshold: '110%'
          token: ${{ secrets.GITHUB_TOKEN }}
      - name: Download artifacts (validate-PonosV)
        uses: actions/download-artifact@v4
        with:
          name: validate-PonosV
      - name: Download artifacts (validate-baryonicSuppression)
        uses: actions/download-artifact@v4
        with:
          name: validate-baryonicSuppression
      - name: Download artifacts (build-profile)
        uses: actions/download-artifact@v4
        with:
          name: build-profile
      - name: Push validation results
        run: |
          git checkout gh-pages
          mkdir -p dev/valid/darkMatterOnlySubhalos
          mkdir -p dev/valid/milkyWayModel
          mkdir -p dev/valid/strongLensing
          mkdir -p dev/valid/idealizedSubhaloSimulations
          mv results_darkMatterOnlySubhalos.json       dev/valid/darkMatterOnlySubhalos/results.json
          mv results_milkyWayModel.json                dev/valid/milkyWayModel/results.json
          mv results_PonosV.json                       dev/valid/strongLensing/results_PonosV.json
          mv results_baryonicSuppression.json          dev/valid/baryonicSuppression/results_baryonicSuppression.json
          mv results_idealizedSubhaloSimulation_*.json dev/valid/idealizedSubhaloSimulations/
          git config --local user.email "github@users.noreply.github.com"
          git config --local user.name "github-action-validate"
          git add dev/valid/darkMatterOnlySubhalos/results.json dev/valid/milkyWayModel/results.json dev/valid/strongLensing/results_PonosV.json dev/valid/baryonicSuppression/results_baryonicSuppression.json dev/valid/idealizedSubhaloSimulations/results_idealizedSubhaloSimulation_*.json
          git commit -m "Update validation results"
          git push --set-upstream origin gh-pages
          git checkout -
        if: github.event_name != 'pull_request'
      - name: Push build profile
        run: |
          git checkout gh-pages
          mkdir -p dev/bench/meta
          mv buildProfile.html dev/bench/meta/buildProfile.html
          git config --local user.email "github@users.noreply.github.com"
          git config --local user.name "github-action-validate"
          git add dev/bench/meta/buildProfile.html
          git commit -m "Update build profile"
          git push --set-upstream origin gh-pages
          git checkout -
        if: github.event_name != 'pull_request'
  Deploy:
    runs-on: ubuntu-latest
    if: github.ref == 'refs/heads/master'
    needs: [ Build-Executable-Linux,
             Build-Executables-Instrumented-Linux,
             Build-Executables-MPI-Linux,
             Build-Library-Linux,
             Build-Docker-Linux,
             Build-Documentation-Linux,
             Build-Tools,
             Build-Executable-MacOS,
             Build-Executable-MacOS-M1,
             Build-Library-MacOS,
             Build-Tools-MacOS,
             Build-Tools-MacOS-M1,
             Profile-Dark-Matter-Only-Subhalos,
             Profile-Milky-Way-Model,
             Profile-Milky-Way-SIDM-Model,
             Profile-Dark-Matter-Only-Subhalos-GProf,
             Profile-Milky-Way-GProf,
             Profile-Milky-Way-SIDM-GProf,
             Codes,
             Crash,
             Fail,
             Codes-MPI,
             Codes-Debugging,
             Memory-Leaks,
             Memory-Leaks-MPI,
             Cosmology,
             Mass-Conservation,
             Merger-Tree-Builder,
             Merger-Tree-Write,
             Model-Integration,
             Miscellaneous,
             Miscellaneous-Cached,
             Miscellaneous-IRATE,
             Miscellaneous-Deep,
             Miscellaneous-Models,
             Outputs,
             Regressions,
             Regressions-Cached,
             Methods,
             Methods-MPI,
             MPI-State-Restore,
             MPI-Radiative-Transfer-Stromgren-Sphere,
             MPI-MCMC,
             Python-Interface,
             Codes-MacOS,
             Python-Interface-MacOS,
             Validate ]
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Download artifacts (executable-linux)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-exec
      - name: Download artifacts (library-linux)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-library
      - name: Download artifacts (docs)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-docs
      - name: Download artifacts (tools-linux)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-tools
      - name: Upload assets to release
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        run: |
          gh release upload bleeding-edge ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2 --clobber
          rm ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2
      - name: Download artifacts (executable-macos)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-exec-MacOS
      - name: Download artifacts (debug-macos)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-debug-MacOS
      - name: Download artifacts (executable-macos-m1)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-exec-MacOS-M1
      - name: Download artifacts (debug-macos-m1)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-debug-MacOS-M1
      - name: Download artifacts (library-macos)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-library-MacOS
      - name: Download artifacts (tools-macos)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-tools-MacOS
      - name: Download artifacts (tools-macos-m1)
        uses: actions/download-artifact@v4
        with:
          name: galacticus-tools-MacOS-M1
      - name: Upload assets to release
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        run: |
          gh release upload bleeding-edge ./Galacticus_MacOS.exe ./Galacticus_MacOS-M1.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./toolsMacOSM1.zip ./debugSymbolsMacOS.zip ./debugSymbolsMacOS-M1.zip --clobber
          rm ./Galacticus_MacOS.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./toolsMacOSM1.zip ./debugSymbolsMacOS.zip
      - name: Download artifacts (perf-darkMatterOnlySubHalos)
        uses: actions/download-artifact@v4
        with:
          name: perf-darkMatterOnlySubHalos
      - name: Download artifacts (perf-milkyWay)
        uses: actions/download-artifact@v4
        with:
          name: perf-milkyWay
      - name: Download artifacts (perf-milkyWay_SIDM)
        uses: actions/download-artifact@v4
        with:
          name: perf-milkyWay_SIDM
      - name: Download artifacts (perf-darkMatterOnlySubHalos-gprof)
        uses: actions/download-artifact@v4
        with:
          name: perf-darkMatterOnlySubHalos-gprof
      - name: Download artifacts (perf-milkyWay-gprof)
        uses: actions/download-artifact@v4
        with:
          name: perf-milkyWay-gprof
      - name: Download artifacts (perf-milkyWay_SIDM-gprof)
        uses: actions/download-artifact@v4
        with:
          name: perf-milkyWay_SIDM-gprof
      - name: Upload assets to release
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        run: |
          gh release upload bleeding-edge ./darkMatterOnlySubHalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubHalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2 --clobber
          rm ./darkMatterOnlySubHalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubHalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2
  Update-Release-Tag:
    runs-on: ubuntu-latest
    if: github.ref == 'refs/heads/master'
    needs: Deploy
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Update tag
        run: |
          git tag -f bleeding-edge
          git push origin -f bleeding-edge
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      - run: echo "This job's status is ${{ job.status }}."