-
Notifications
You must be signed in to change notification settings - Fork 1k
/
5.gff3
150 lines (150 loc) · 8.33 KB
/
5.gff3
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
##gff-version 3
##date Tue Jun 26 10:48:17 2007
##sequence-region ctgA 1 50000
##source gbrowse GFFToGalaxyDumper plugin
##NOTE: All features dumped.
ctgA example my_feature 22132 24633 . + . ID=My_feature:f15
ctgA example my_feature 46990 48410 . - . ID=My_feature:f11
ctgA example my_feature 44705 47713 . - . ID=My_feature:f01
ctgA example my_feature 36649 40440 . - . ID=My_feature:f03
ctgA example my_feature 23072 23185 . + . ID=My_feature:f14
ctgA example my_feature 37242 38653 . + . ID=My_feature:f04
ctgA example motif 37497 40559 . - . ID=Motif:m15;Note=7-transmembrane
ctgA example my_feature 36034 38167 . + . ID=My_feature:f09
ctgA example motif 28332 30033 . - . ID=Motif:m02;Note=HOX
ctgA example my_feature 4715 5968 . - . ID=My_feature:f05
ctgA example motif 48253 48366 . + . ID=Motif:m01;Note=WD40
ctgA example BAC 1000 20000 . . . ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads
ctgA example right_end_read 19500 20000 . - . Parent=BAC:b101.2
ctgA example left_end_read 1000 1500 . + . Parent=BAC:b101.2
ctgA example motif 13801 14007 . - . ID=Motif:m05;Note=helix+loop+helix
ctgA example coding 1050 9000 . + . ID=mRNA:EDEN.1;Gene=EDEN
ctgA example CDS 1201 1500 . + 0 Parent=mRNA:EDEN.1
ctgA example CDS 3000 3902 . + 0 Parent=mRNA:EDEN.1
ctgA example CDS 5000 5500 . + 0 Parent=mRNA:EDEN.1
ctgA example CDS 7000 7608 . + 0 Parent=mRNA:EDEN.1
ctgA example processed_transcript 1050 9000 . + . ID=mRNA:EDEN.1
ctgA example 5'-UTR 1050 1200 . + . Parent=mRNA:EDEN.1
ctgA example 3'-UTR 7609 9000 . + . Parent=mRNA:EDEN.1
ctgA est match 5410 7503 . - . ID=EST:agt830.3;Target=agt830.3+1+595
ctgA est HSP 7000 7503 . - . Parent=EST:agt830.3;Target=agt830.3+1+504
ctgA est HSP 5410 5500 . - . Parent=EST:agt830.3;Target=agt830.3+505+595
ctgA example motif 46012 48851 . + . ID=Motif:m09;Note=kinase
ctgA example match 6885 8999 . - . ID=Match:seg03
ctgA example HSP 8306 8999 . - . Parent=Match:seg03
ctgA example HSP 8055 8080 . - . Parent=Match:seg03
ctgA example HSP 7410 7737 . - . Parent=Match:seg03
ctgA example HSP 6885 7241 . - . Parent=Match:seg03
ctgA example my_feature 13280 16394 . + . ID=My_feature:f08
ctgA example match 29771 32937 . + . ID=Match:seg10
ctgA example HSP 29771 29942 . + . Parent=Match:seg10
ctgA example HSP 30042 30340 . + . Parent=Match:seg10
ctgA example HSP 30810 31307 . + . Parent=Match:seg10
ctgA example HSP 31761 31984 . + . Parent=Match:seg10
ctgA example HSP 32374 32937 . + . Parent=Match:seg10
ctgA example match 36616 37227 . - . ID=Match:seg09
ctgA example HSP 37208 37227 . - . Parent=Match:seg09
ctgA example HSP 36616 37057 . - . Parent=Match:seg09
ctgA example motif 11911 15561 . + . ID=Motif:m11;Note=kinase
ctgA est match 1050 3202 . + . ID=EST:agt830.5;Target=agt830.5+1+654
ctgA est HSP 1050 1500 . + . Parent=EST:agt830.5;Target=agt830.5+1+451
ctgA est HSP 3000 3202 . + . Parent=EST:agt830.5;Target=agt830.5+452+654
ctgA example motif 15396 16159 . + . ID=Motif:m03;Note=zinc+finger
ctgA est match 1150 7200 . + . ID=EST:agt767.5;Target=agt767.5+1+1153
ctgA est HSP 1150 1500 . + . Parent=EST:agt767.5;Target=agt767.5+1+351
ctgA est HSP 5000 5500 . + . Parent=EST:agt767.5;Target=agt767.5+352+852
ctgA est HSP 7000 7200 . + . Parent=EST:agt767.5;Target=agt767.5+853+1153
ctgA est match 1050 7300 . + . ID=EST:agt221.5;Target=agt221.5+1+1253
ctgA est HSP 1050 1500 . + . Parent=EST:agt221.5;Target=agt221.5+1+451
ctgA est HSP 5000 5500 . + . Parent=EST:agt221.5;Target=agt221.5+452+952
ctgA est HSP 7000 7300 . + . Parent=EST:agt221.5;Target=agt221.5+953+1253
ctgA example my_feature 19157 22915 . - . ID=My_feature:f13
ctgA est match 8000 9000 . - . ID=EST:agt767.3;Target=agt767.3+1+1001
ctgA est HSP 8000 9000 . - . Parent=EST:agt767.3;Target=agt767.3+1+1001
ctgA example motif 28342 28447 . - . ID=Motif:m10;Note=DEAD+box
ctgA example motif 17667 17690 . + . ID=Motif:m13;Note=DEAD+box
ctgA example trace 44401 45925 . + . ID=name:trace;trace=volvox_trace.scf
ctgA example match 26122 34466 . + . ID=Match:seg02
ctgA example HSP 26122 26126 . + . Parent=Match:seg02
ctgA example HSP 26497 26869 . + . Parent=Match:seg02
ctgA example HSP 27201 27325 . + . Parent=Match:seg02
ctgA example HSP 27372 27433 . + . Parent=Match:seg02
ctgA example HSP 27565 27565 . + . Parent=Match:seg02
ctgA example HSP 27813 28091 . + . Parent=Match:seg02
ctgA example HSP 28093 28201 . + . Parent=Match:seg02
ctgA example HSP 28329 28377 . + . Parent=Match:seg02
ctgA example HSP 28829 29194 . + . Parent=Match:seg02
ctgA example HSP 29517 29702 . + . Parent=Match:seg02
ctgA example HSP 29713 30061 . + . Parent=Match:seg02
ctgA example HSP 30329 30774 . + . Parent=Match:seg02
ctgA example HSP 30808 31306 . + . Parent=Match:seg02
ctgA example HSP 31516 31729 . + . Parent=Match:seg02
ctgA example HSP 31753 32154 . + . Parent=Match:seg02
ctgA example HSP 32595 32696 . + . Parent=Match:seg02
ctgA example HSP 32892 32901 . + . Parent=Match:seg02
ctgA example HSP 33127 33388 . + . Parent=Match:seg02
ctgA example HSP 33439 33443 . + . Parent=Match:seg02
ctgA example HSP 33759 34209 . + . Parent=Match:seg02
ctgA example HSP 34401 34466 . + . Parent=Match:seg02
ctgA example contig 1 50000 . . . ID=Contig:ctgA
ctgA example match 41137 47829 . - . ID=Match:seg14
ctgA example HSP 47449 47829 . - . Parent=Match:seg14
ctgA example HSP 46816 46992 . - . Parent=Match:seg14
ctgA example HSP 46092 46318 . - . Parent=Match:seg14
ctgA example HSP 45790 46022 . - . Parent=Match:seg14
ctgA example HSP 45231 45488 . - . Parent=Match:seg14
ctgA example HSP 44763 45030 . - . Parent=Match:seg14
ctgA example HSP 44065 44556 . - . Parent=Match:seg14
ctgA example HSP 43395 43811 . - . Parent=Match:seg14
ctgA example HSP 42890 43270 . - . Parent=Match:seg14
ctgA example HSP 42057 42474 . - . Parent=Match:seg14
ctgA example HSP 41754 41948 . - . Parent=Match:seg14
ctgA example HSP 41137 41318 . - . Parent=Match:seg14
ctgA example match 12531 15870 . + . ID=Match:seg12
ctgA example HSP 12531 12895 . + . Parent=Match:seg12
ctgA example HSP 13122 13449 . + . Parent=Match:seg12
ctgA example HSP 13452 13745 . + . Parent=Match:seg12
ctgA example HSP 13908 13965 . + . Parent=Match:seg12
ctgA example HSP 13998 14488 . + . Parent=Match:seg12
ctgA example HSP 14564 14899 . + . Parent=Match:seg12
ctgA example HSP 15185 15276 . + . Parent=Match:seg12
ctgA example HSP 15639 15736 . + . Parent=Match:seg12
ctgA example HSP 15745 15870 . + . Parent=Match:seg12
ctgA est match 7500 8000 . - . ID=EST:agt221.3;Target=agt221.3+1+501
ctgA est HSP 7500 8000 . - . Parent=EST:agt221.3;Target=agt221.3+1+501
ctgA example coding 1300 9000 . + . ID=mRNA:EDEN.3;Gene=EDEN
ctgA example CDS 3301 3902 . + 0 Parent=mRNA:EDEN.3
ctgA example CDS 5000 5500 . + 1 Parent=mRNA:EDEN.3
ctgA example CDS 7000 7600 . + 1 Parent=mRNA:EDEN.3
ctgA example processed_transcript 1300 9000 . + . ID=mRNA:EDEN.3
ctgA example 5'-UTR 1300 1500 . + . Parent=mRNA:EDEN.3
ctgA example 5'-UTR 3000 3300 . + . Parent=mRNA:EDEN.3
ctgA example 3'-UTR 7601 9000 . + . Parent=mRNA:EDEN.3
ctgA example match 26503 35904 . - . ID=Match:seg05
ctgA example HSP 35642 35904 . - . Parent=Match:seg05
ctgA example HSP 35333 35507 . - . Parent=Match:seg05
ctgA example HSP 34605 34983 . - . Parent=Match:seg05
ctgA example HSP 34244 34313 . - . Parent=Match:seg05
ctgA example HSP 33438 33868 . - . Parent=Match:seg05
ctgA example HSP 33053 33325 . - . Parent=Match:seg05
ctgA example HSP 32208 32680 . - . Parent=Match:seg05
ctgA example HSP 32010 32057 . - . Parent=Match:seg05
ctgA example HSP 31421 31817 . - . Parent=Match:seg05
ctgA example HSP 31232 31236 . - . Parent=Match:seg05
ctgA example HSP 30465 30798 . - . Parent=Match:seg05
ctgA example HSP 30108 30216 . - . Parent=Match:seg05
ctgA example HSP 29513 29647 . - . Parent=Match:seg05
ctgA example HSP 28777 29058 . - . Parent=Match:seg05
ctgA example HSP 28225 28316 . - . Parent=Match:seg05
ctgA example HSP 27887 28076 . - . Parent=Match:seg05
ctgA example HSP 27448 27860 . - . Parent=Match:seg05
ctgA example HSP 27172 27185 . - . Parent=Match:seg05
ctgA example HSP 26503 26799 . - . Parent=Match:seg05
ctgA example match 49406 50000 . + . ID=Match:seg13
ctgA example HSP 49406 49476 . + . Parent=Match:seg13
ctgA example HSP 49762 50000 . + . Parent=Match:seg13
ctgA example gene 1050 9000 . + . ID=Gene:EDEN;Note=protein+kinase
ctgA example motif 33325 35791 . + . ID=Motif:m04;Note=Ig-like
ctgA example match 31785 32359 . + . ID=Match:seg01
ctgA example HSP 31785 31939 . + . Parent=Match:seg01
ctgA example HSP 32329 32359 . + . Parent=Match:seg01