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2.5.0 - Dec 17, 2024. (sha d835738f6cb6625e2dac1355bd58ccbc3970598d)

  • Fix tests by @nuwang (PR #138)
  • Add lint warning for tools with cores and no mem by @natefoo (PR #140)

2.4.0 - Feb 29, 2024. (sha cd877c4b34e81dde1a02d5e3d7a6385e6b6f5855)

  • Update shared db short link by @nuwang (PR #128)
  • Improved docs by @nuwang (PR #126)
  • Add optional slow tests by @nuwang (PR #66)

2.3.3 - Feb 13, 2024. (sha 97405a5e8ab586b80037f036caa3cea0eabfeb10)

  • Fix get_dataset_size for datasets with null file_size column by @mvdbeek (PR #116)
  • Add contributing doc and update readme by @afgane (PR #122)
  • Add readthedocs configuration by @nuwang (PR #121)
  • Add to to_dict functions to Destination and TagSetManager classes by @pauldg (PR #119)
  • Add a helper to get the object store ids and the datasets size for every dataset in a job by @sanjaysrikakulam (PR #125)

2.3.2 - Aug 25, 2023. (sha 26ddcfb024679a8bb2d698461e7fcbfa8453c45e)

  • Fix legacy version parsing by using Galaxy's version parsing if available by @bgruening (PR #112)
  • Fix E721 for type comparison by @mvdbeek (PR #113)

2.3.1 - Jul 20, 2023. (sha fc8733723fd264c06471cabc89dc32813207eff0)

  • Add two tests around destination inheritance (one fails) + fix by @cat-bro, @nuwang (PR #110)

2.3.0 - Jul 05, 2023. (sha fb5cb966e5f8e370a1566f94313146f4f3a50054)

  • fix resubmission tests by @bernt-matthias (PR #78)
  • Fix issue with how default inheritance is applied to multiple files by @nuwang (PR #105)
  • Fix evaluation to support resource clamping by @nuwang (PR #107)

2.2.4 - May 26, 2023. (sha 16222dffa1a8d5aac60ebe78328283b29552f8de)

  • When regex compilation fails, log what was attempting to be compiled by @natefoo (PR #97)
  • Add helper for tool version equality comparison by @sanjaysrikakulam (PR #98)
  • Match cores, mem and gpus whenever they are defined by @kysrpex (PR #99)
  • Modify linter to flag regex errors by @nuwang (PR #102)
  • Create dependabot.yml by @nuwang (PR #103)

2.2.3 - May 04, 2023. (sha d1ac1a9553aaab19434c79e5d78f3db63647915c)

  • Add id to mock_galaxy.User by @kysrpex (PR #96)
  • Fix dry run tool version by @cat-bro (PR #94)

2.2.2 - Apr 25, 2023. (sha 3ab3f209ffdf3117a2efcc8cf70ebbf4c57efc6f)

  • Fix formatter ordering of inherits field by @nuwang (PR #90)
  • Add helpers for tool version comparison by @cat-bro (PR #91)
  • Fix dry run user by @cat-bro (PR #92)
  • Failing test for pulsar user scenario by @cat-bro and @nuwang (PR #93)

2.2.1 - Mar 30, 2023. (sha 060ff9e411b35a2fed444b19b61bbedfe2d2cc4d)

  • A role rule has no access to a tool's scheduling tags by @cat-bro (PR #89)

2.2.0 - Mar 22, 2023. (sha 129c65b58998661da325294fa8461f0a48fcebb0)

  • Add helper for checking entity tags within a tpv rule by @cat-bro (PR #86)
  • Remove condition from tpv packaging by @nuwang (PR #87)
  • refactor: remove unnecessary overrides of superclass __init__ by @nuwang (PR #88)

2.1.0 - Mar 06, 2023. (sha 0f47032a1faf416b34969fb26c332428cb74209a)

  • Automatically convert envs to string, but make sure params are preserved by @nuwang (PR #73)
  • Fix indentation by @bernt-matthias in (PR #76)
  • Convert env to a list compatible with Galaxy job conf by @natefoo in (PR #79)
  • Fix missing app.config.is_set() in mock config for dry-run by @natefoo in (PR #80)
  • Refactor and fix dryrun by @nuwang in (PR #82)
  • Add initializer to handle empty sequence when reducing by @nuwang in (PR #84)

2.0.1 - Jan 11, 2023. (sha 8860c1d570ed94310f5ed57b2166390124d9bbf8)

  • create __init__.py in tpv core test folder by @bgruening (PR #70)

2.0.0 - Dec 24, 2022. (sha b593d5527bce51a7070684569dc8f19aff3d24e0)

  • Add a tpv dry-run subcommand by @natefoo (PR #52)
  • Simplify TPV by disambiguating terms by @nuwang (PR #58)
  • Additional context params by @nuwang (PR #62)
  • Use only TPV defined destinations, ignoring job_conf by @nuwang (PR #63)
  • Add support for abstract entities by @nuwang (PR #64)
  • Add destination min accepted by @nuwang (PR #67)
  • Shared rules inheritance test by @cat-bro (PR #68)
  • Update github actions by @nuwang (PR #69)

1.4.1 - Nov 21, 2022. (sha 396afc17d0ba2f78e0827e6f8319246977994172)

  • Avoid deepcopying loader when cloning entities (PR #54)
  • Change remaining uses of pyyaml to ruaml.yaml (PR #51)
  • Automatic PyPi deployment action (#43)

1.4.0 - Oct 12, 2022. (sha c4a49330a55f02107a9ece4ac84fd74f956f7017)

  • Added support for the execute block to change entity properties
  • Added link to TPV shared database.

1.3.0 - Sep 28, 2022. (sha 3e9342622ab8bb2b6b18ef1fd32625e246eec66a)

  • Added tpv format command for prettying and ordering tpv tool lists
  • Support for overriding destination name
  • Fix some bugs in context variable handling
  • Misc. bug fixes and refactoring

1.2.0 - Jun 15, 2022. (sha 872d200f3bfeb7356ba76bb1ee14134a50608d92)

  • vortex package and cli renamed to tpv for consistency.
  • All matching entity regexes are applied, not just the first. Order of application is in the order of definition.
  • When a particular entity type is matched, its definitions are cached, so that future lookups are O(1).
  • Support for job resubmission handling, with integration tests for Galaxy,
  • Allow destinations to be treated as regular entities, with support for rules and expressions.
  • Support for global and local context variables that can be referenced in expressions.
  • Improved support for complex jobs param types like dicts and lists, which are now recursively evaluated.

1.1.0 - Mar 25, 2022. (sha 0e65d9a6a16bbbfd463031677067e1af9f4dac64)

  • The "match" clause has been deprecated and renamed to "if", for easier readability of rules.
  • When no default mapping for a tool exists, choose the first available destination for a simpler initial experience.
  • A sample config file has been added to provide a starting point for new TPV users.

1.0.0 - Mar 07, 2022. (sha 2e082a4ec0868e03df1b902562810873421823e5)

  • Initial PyPi release of total-perspective-vortex.
  • Basic usage docs and examples.
  • 94% test coverage.