1.0.5 release

Breaking change

• New configuration file (.tapqir/config.yaml) is incompatible with previous versions of Tapqir

Enhancements

• Extend image distribution (KSMOGN) to support multi-dye multi-color data by @ordabayevy in #323
• Add a GUI element for the offset histogram bin size by @ordabayevy in #329
• Add GUI for prior inputs by @ordabayevy in #330
• Add GUI for offset parameter inputs by @ordabayevy in #331
• update docs to reflect new changes by @ordabayevy in #332

Internal

• Fix ksmogn dist by @ordabayevy in #325
• Lowercase Cosmos model name by @ordabayevy in #326
• Move concatenation logic into handler by @ordabayevy in #327
• Convert ndarray stats to list before saving summary by @ordabayevy in #328

Full Changelog: v1.0.4...v1.0.5

1.0.4 release

New features & GUI

• Field of View images are now also displayed in the Results GUI by @ordabayevy in #318
• AOIs can be manually excluded from analysis by @ordabayevy in #319
• Hide frame range instead of disabling by @ordabayevy in #321

Internal & Fixes

• inputBox by @ordabayevy in #317
• Update cosmos model reference by @ordabayevy in #320
• Update docs by @ordabayevy in #322

Full Changelog: v1.0.3...v1.0.4

1.0.3 release

GUI & usability

• Make loading messages appear more responsive by @ordabayevy in #301
• Reset offtarget path on toggle of use offtarget by @ordabayevy in #304
• Validate paths in CLI application by @ordabayevy in #305
• Handle errors and exceptions by @ordabayevy in #307
• Add View logs tab by @ordabayevy in #311
• Show summary table in results tab by @ordabayevy in #315
• Disable load results button after the first click (reloading doesn't work) by @ordabayevy in #316
• Update instructions accordingly by @ordabayevy in #314

Bug fixes

• fix small bugs & clean up by @ordabayevy in #312

Optimization & Internal

• Refactor SNR computation to avoid memory overflow by @ordabayevy in #313
• Optimize Cosmos.compute_probs by @ordabayevy in #302
• Add & use StatsMessenger to compute credible intervals by @ordabayevy in #303
• Refactor load gui defaults by @ordabayevy in #306
• Publish latest branch to TestPyPi by @ordabayevy in #308
• Publish Python 🐍 distributions 📦 to PyPI by @ordabayevy in #309
• Update python-app.yml by @ordabayevy in #310

Full Changelog: v1.0.2...v1.0.3

1.0.2 release

What's Changed

• Fix google colab installation by @ordabayevy in #300
• Constrain to click<=8.0.4 due to ImporError (fastapi/typer#377)

Breaking

• Now to install Tapqir on desktop computers (Linux, WSL2) run pip install tapqir[desktop]

Full Changelog: v1.0.1...v1.0.2

1.0.1 release

New changes

• Updated and significantly improved GUI
• Update to KeOps v2.0 in #295
• Pin to pyro-ppl==1.8.0 and torch==1.10.0 in #299
• Update and fix installation instructions
• Update README in #293
• Select offset bin size in #274
• Bug fixes

1.0 release

Initial Tapqir release

This version of the program was used to produce results in "Bayesian machine learning analysis of single-molecule fluorescence colocalization images" (Ordabayev et. al.).

Summary

• Single-color time-independent cosmos model
• CLI (based on Typer) and GUI (based on Voila) interfaces
• Online Documentation and Tutorials