From 946cf0c17b13d2d016bb84a88bfc1a83530e5a73 Mon Sep 17 00:00:00 2001 From: sjm41 Date: Mon, 22 Jan 2024 12:29:33 +0000 Subject: [PATCH 1/2] Changed term names, defs and capable of relation. #26833 --- src/ontology/go-edit.obo | 28 ++++++++++++++++++---------- 1 file changed, 18 insertions(+), 10 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index 72c39cd3e9..fc0f2b6085 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -83176,11 +83176,12 @@ is_a: GO:0016888 ! endodeoxyribonuclease activity, producing 5'-phosphomonoester [Term] id: GO:0008834 -name: di-trans,poly-cis-decaprenylcistransferase activity +name: di-trans,poly-cis-undecaprenyl-diphosphate synthase activity namespace: molecular_function def: "Catalysis of the reaction: di-trans-poly-cis-decaprenyl diphosphate + isopentenyl diphosphate = diphosphate + di-trans-poly-cis-undecaprenyl diphosphate." [EC:2.5.1.31] synonym: "bactoprenyl-diphosphate synthase activity" RELATED [EC:2.5.1.31] synonym: "di-trans,poly-cis-decaprenyl-diphosphate:isopentenyl-diphosphate undecaprenylcistransferase activity" RELATED [EC:2.5.1.31] +synonym: "di-trans,poly-cis-decaprenylcistransferase activity" EXACT [] synonym: "di-trans,poly-cis-undecaprenyl-diphosphate synthase activity" RELATED [EC:2.5.1.31] synonym: "undecaprenyl diphosphate synthase activity" EXACT [] synonym: "undecaprenyl diphosphate synthetase activity" RELATED [EC:2.5.1.31] @@ -83192,6 +83193,7 @@ xref: EC:2.5.1.31 xref: MetaCyc:RXN-8999 xref: RHEA:27551 is_a: GO:0004659 ! prenyltransferase activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26833" xsd:anyURI [Term] id: GO:0008835 @@ -181074,29 +181076,35 @@ relationship: part_of GO:0032474 ! otolith morphogenesis [Term] id: GO:0032476 -name: decaprenyl diphosphate synthase complex +name: polyprenyl diphosphate synthase complex namespace: cellular_component -def: "A complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis." [GOC:mah, PMID:14519123] +def: "A complex that possesses polyprenyl diphosphate synthase activity involved in the synthesis of the isoprenoid chain of ubiquinone whose length varies between organisms." [GOC:mah, PMID:14519123, PMID:16262699] subset: goslim_pir +synonym: "decaprenyl diphosphate synthase complex" NARROW [] intersection_of: GO:1902494 ! catalytic complex -intersection_of: capable_of GO:0008834 ! di-trans,poly-cis-decaprenylcistransferase activity +intersection_of: capable_of GO:0004659 ! prenyltransferase activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26833" xsd:anyURI [Term] id: GO:0032477 -name: homodimeric decaprenyl diphosphate synthase complex +name: homodimeric polyprenyl diphosphate synthase complex namespace: cellular_component -def: "A homodimeric complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis." [PMID:14519123] -is_a: GO:0032476 ! decaprenyl diphosphate synthase complex +def: "A homodimeric complex that possesses polyprenyl diphosphate synthase activity involved in the synthesis of the isoprenoid chain of ubiquinone whose length varies between organisms." [PMID:14519123] +synonym: "homodimeric decaprenyl diphosphate synthase complex" NARROW [] +is_a: GO:0032476 ! polyprenyl diphosphate synthase complex relationship: part_of GO:0005737 ! cytoplasm +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26833" xsd:anyURI [Term] id: GO:0032478 -name: heterotetrameric decaprenyl diphosphate synthase complex +name: heterotetrameric polyprenyl diphosphate synthase complex namespace: cellular_component -def: "A heterotetrameric complex located in the mitochondrial inner membrane that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis. In S. pombe it is a heterotetramer of Dlp1 and Dps1." [PMID:14519123] -is_a: GO:0032476 ! decaprenyl diphosphate synthase complex +def: "A heterotetrameric complex located in the mitochondrial inner membrane that possesses polyprenyl diphosphate synthase activity involved in the synthesis of the isoprenoid chain of ubiquinone whose length varies between organisms. In S. pombe it is a heterotetramer of Dlp1 and Dps1." [PMID:14519123, PMID:16262699] +synonym: "heterotetrameric decaprenyl diphosphate synthase complex" NARROW [] +is_a: GO:0032476 ! polyprenyl diphosphate synthase complex relationship: part_of GO:0005743 ! mitochondrial inner membrane relationship: part_of GO:0031966 ! mitochondrial membrane +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26833" xsd:anyURI [Term] id: GO:0032479 From 457429ab09fead762c00e361155766594ce6a649 Mon Sep 17 00:00:00 2001 From: sjm41 Date: Mon, 22 Jan 2024 12:41:15 +0000 Subject: [PATCH 2/2] Changed term names, defs and capable of relation. #26833 --- src/ontology/go-edit.obo | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index fc0f2b6085..fbbd462f8e 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -83182,7 +83182,6 @@ def: "Catalysis of the reaction: di-trans-poly-cis-decaprenyl diphosphate + isop synonym: "bactoprenyl-diphosphate synthase activity" RELATED [EC:2.5.1.31] synonym: "di-trans,poly-cis-decaprenyl-diphosphate:isopentenyl-diphosphate undecaprenylcistransferase activity" RELATED [EC:2.5.1.31] synonym: "di-trans,poly-cis-decaprenylcistransferase activity" EXACT [] -synonym: "di-trans,poly-cis-undecaprenyl-diphosphate synthase activity" RELATED [EC:2.5.1.31] synonym: "undecaprenyl diphosphate synthase activity" EXACT [] synonym: "undecaprenyl diphosphate synthetase activity" RELATED [EC:2.5.1.31] synonym: "undecaprenyl pyrophosphate synthase activity" RELATED [EC:2.5.1.31]