From 35e519e7b8dac87a8c9ddf69050707644d0f86ac Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Wed, 10 Jul 2024 15:40:45 -0700 Subject: [PATCH] Obsoleted 3 nopaline process terms; #28389 --- src/ontology/go-edit.obo | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index 1e3bb94bfc..1989b3a56c 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -143760,15 +143760,15 @@ intersection_of: has_primary_input CHEBI:46912 ! ornithinium(1+) [Term] id: GO:0019468 -name: nopaline catabolic process +name: obsolete nopaline catabolic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of nopaline (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:jl, ISBN:0198506732] +def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nopaline (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:jl, ISBN:0198506732] +comment: The reason for obsoletion is that this term represents a molecular function. synonym: "nopaline breakdown" EXACT [] synonym: "nopaline catabolism" EXACT [] synonym: "nopaline degradation" EXACT [] -xref: MetaCyc:NOPALINEDEG-PWY -intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58074 ! D-nopalinate(1-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI +is_obsolete: true [Term] id: GO:0019469 @@ -237182,15 +237182,14 @@ intersection_of: has_primary_input CHEBI:18153 ! ethene [Term] id: GO:0042458 -name: nopaline catabolic process to proline +name: obsolete nopaline catabolic process to proline namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline." [GOC:go_curators] +def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline." [GOC:go_curators] +comment: The reason for obsoletion is that this term represents a molecular function. synonym: "nopaline breakdown to proline" EXACT [] synonym: "nopaline degradation to proline" EXACT [] -xref: MetaCyc:NOPALINEDEG-PWY -intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58074 ! D-nopalinate(1-) -intersection_of: has_primary_output CHEBI:32871 ! prolinate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI +is_obsolete: true [Term] id: GO:0042459 @@ -277214,12 +277213,13 @@ intersection_of: has_primary_input_or_output CHEBI:29748 ! chorismate(2-) [Term] id: GO:0046418 -name: nopaline metabolic process +name: obsolete nopaline metabolic process namespace: biological_process -def: "The chemical reactions and pathways involving nopaline, (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:ai] +def: "OBSOLETE. The chemical reactions and pathways involving nopaline, (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:ai] +comment: The reason for obsoletion is that this term represents a molecular function. synonym: "nopaline metabolism" EXACT [] -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58074 ! D-nopalinate(1-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI +is_obsolete: true [Term] id: GO:0046419