Obsoletion request: GO:0005845 mRNA CAP binding complex

[ValWood]

Please provide as much information as you can:

• GO term ID and Label
  GO:0005845 mRNA cap binding complex

• Reason for deprecation Put an x in the appropriate box:

• The reason for obsoletion is that this term was an unnecessary grouping term.

We should keep the grouping term "RNA cap binding complex" for the bacterial Cap binding complex (assuming there is one), but make it clear this is for THE cap binding complex

and obsolete
GO:0005845 mRNA cap binding complex
Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA.

(otherwise, we would need to group the missing "complexes which bind to the cap" like RNA de capping complexes under here, and find a way to make it clear that this term was not the CBC)

and remove any descendants that do not refer to THE CAP binding complex

• "Replace by" term (ID and label)
  If all annotations can safely be moved to that term

• "Consider" term(s) (ID and label)
  Suggestions for reannotation

• Are there annotations to this term?

• How many EXP:

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

• Is this term in a subset? (check the AmiGO page for that term)

• Any other information

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Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet

• Review annotations to GO:0005845 mRNA cap binding complex go-annotation#4832

• find external mappings (via IEAS), include in obsoletion notice

• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends (go-friends@mailman.stanford.edu)
• paste the text in the ontology ticket