You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
id: GO:0004802
name: transketolase activity
namespace: molecular_function
def: "Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor." [GOC:fmc, RHEA:10508]
synonym: "fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity" NARROW [GOC:fmc, GOC:mah]
synonym: "glycoaldehyde transferase activity" RELATED [EC:2.2.1.1]
synonym: "glycolaldehydetransferase activity" RELATED [EC:2.2.1.1]
synonym: "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity" NARROW [EC:2.2.1.1]
xref: EC:2.2.1.1
xref: MetaCyc:1TRANSKETO-RXN
xref: RHEA:10508
is_a: GO:0016744 ! transketolase or transaldolase activity
The GO def here is correctly broad.
E.g. the EC:2.2.1.1 says:
Reaction: D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = aldehydo-D-ribose 5-phosphate + D-xylulose 5-phosphate
Comment: Wide specificity for both reactants, e.g. converts hydroxypyruvate and R-CHO into CO2 and R-CHOH-CO-CH2OH.
And RHEA maps EC:2.2.1.1 to two distinct RHEAs:
RHEA:10508 (40,468 proteins in UniProtKB)
D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = aldehydo-D-ribose 5-phosphate + D-xylulose 5-phosphate
=> this is the first reaction catalysed by the TKT enzyme in the Pentose Phosphate Pathway (e.g. see https://reactome.org/PathwayBrowser/#/R-HSA-71336&SEL=R-HSA-71324)
RHEA:27626 (0 proteins in UniProtKB)
D-erythrose 4-phosphate + D-xylulose 5-phosphate = β-D-fructose 6-phosphate + D-glyceraldehyde 3-phosphate
=> this is the second reaction catalysed by the TKT enzyme in the Pentose Phosphate Pathway (e.g. see https://reactome.org/PathwayBrowser/#/R-HSA-71336&SEL=R-HSA-71335)
So, actions here:
Make EC:2.2.1.1 exactMatch
Use EC in def xref instead of RHEA
Make RHEA:10508 narrowMatch
Add RHEA:27626 as narrowMatch
Make MetaCyc:1TRANSKETO-RXN narrowMatch
Add MetaCyc:2TRANSKETO-RXN as narrowMatch
The text was updated successfully, but these errors were encountered:
id: GO:0004802
name: transketolase activity
namespace: molecular_function
def: "Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor." [GOC:fmc, RHEA:10508]
synonym: "fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity" NARROW [GOC:fmc, GOC:mah]
synonym: "glycoaldehyde transferase activity" RELATED [EC:2.2.1.1]
synonym: "glycolaldehydetransferase activity" RELATED [EC:2.2.1.1]
synonym: "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity" NARROW [EC:2.2.1.1]
xref: EC:2.2.1.1
xref: MetaCyc:1TRANSKETO-RXN
xref: RHEA:10508
is_a: GO:0016744 ! transketolase or transaldolase activity
The GO def here is correctly broad.
E.g. the EC:2.2.1.1 says:
Reaction: D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = aldehydo-D-ribose 5-phosphate + D-xylulose 5-phosphate
Comment: Wide specificity for both reactants, e.g. converts hydroxypyruvate and R-CHO into CO2 and R-CHOH-CO-CH2OH.
And RHEA maps EC:2.2.1.1 to two distinct RHEAs:
RHEA:10508 (40,468 proteins in UniProtKB)
D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = aldehydo-D-ribose 5-phosphate + D-xylulose 5-phosphate
=> this is the first reaction catalysed by the TKT enzyme in the Pentose Phosphate Pathway (e.g. see https://reactome.org/PathwayBrowser/#/R-HSA-71336&SEL=R-HSA-71324)
RHEA:27626 (0 proteins in UniProtKB)
D-erythrose 4-phosphate + D-xylulose 5-phosphate = β-D-fructose 6-phosphate + D-glyceraldehyde 3-phosphate
=> this is the second reaction catalysed by the TKT enzyme in the Pentose Phosphate Pathway (e.g. see https://reactome.org/PathwayBrowser/#/R-HSA-71336&SEL=R-HSA-71335)
So, actions here:
The text was updated successfully, but these errors were encountered: