You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'd like to search for all genes closely related to a keyword, for example "Golgi".
However, simply looking for related genes of "GO:0005794 Golgi apparatus (CC)" on AmiGo using "isa_partof_closure" or even "regulates_closure" is not sufficient, since some related terms such as "GO:0048193 Golgi vesicle transport (BP)" finds additional genes that are not in GO:0005794.
Even if I were to do a text search to find all terms with "Golgi" in the name, then query the genes of each term, I may still miss some genes, since Golgi related terms will not necessarily have "Golgi" in the name.
What is the right way to do this? I'm ok with including some "false positives", but I don't really want to miss anything.
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
I'd like to search for all genes closely related to a keyword, for example "Golgi".
However, simply looking for related genes of "GO:0005794 Golgi apparatus (CC)" on AmiGo using "isa_partof_closure" or even "regulates_closure" is not sufficient, since some related terms such as "GO:0048193 Golgi vesicle transport (BP)" finds additional genes that are not in GO:0005794.
Even if I were to do a text search to find all terms with "Golgi" in the name, then query the genes of each term, I may still miss some genes, since Golgi related terms will not necessarily have "Golgi" in the name.
What is the right way to do this? I'm ok with including some "false positives", but I don't really want to miss anything.
Beta Was this translation helpful? Give feedback.
All reactions