Zfin import models

.github/workflows/run-tests.yml

@@ -0,0 +1,17 @@
+name: run-owltools-test
+on: [push]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Run tests
+        run: |
+          mkdir -p bin
+          export PATH=$PATH:$PWD/bin
+          wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools -O bin/owltools
+          wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools-oort-all.jar -O bin/owltools-runner-all.jar
+          chmod +x bin/*
+          make travis-test

.travis.yml

@@ -1,12 +1,15 @@
 language: java
-jdk:
-  - oraclejdk8
+dist: xenial
+
+before_install:
+ - sudo apt-get update
+ - sudo apt-get install -y wget
 
 before_script:
   - mkdir -p bin
   - export PATH=$PATH:$PWD/bin
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools -O bin/owltools
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools-runner-all.jar -O bin/owltools-runner-all.jar
+  - wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools -O bin/owltools
+  - wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools-oort-all.jar  -O bin/owltools-runner-all.jar 
   - chmod +x bin/*
 
 # command to run tests
@@ -22,5 +25,5 @@ branches:
 
 notifications:
   email:
-    - cjmungall@lbl.gov
+    - sjcarbon@lbl.gov
 

models/593423e000000023.ttl

@@ -138,14 +138,14 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 #    Classes
 #################################################################
 
-###  http://identifiers.org/zfin/ZDB-GENE-090929-156
-<http://identifiers.org/zfin/ZDB-GENE-090929-156> rdf:type owl:Class ;
-                                                  <http://www.geneontology.org/formats/oboInOwl#id> "ZFIN:ZDB-GENE-090929-156"^^xsd:string .
+###  http://identifiers.org/zfin/ZDB-MIRNAG-090929-156
+<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> rdf:type owl:Class ;
+                                                  <http://www.geneontology.org/formats/oboInOwl#id> "ZFIN:ZDB-MIRNAG-090929-156"^^xsd:string .
 
 [ rdf:type owl:Axiom ;
-   owl:annotatedSource <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+   owl:annotatedSource <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
    owl:annotatedProperty <http://www.geneontology.org/formats/oboInOwl#id> ;
-   owl:annotatedTarget "ZFIN:ZDB-GENE-090929-156"^^xsd:string ;
+   owl:annotatedTarget "ZFIN:ZDB-MIRNAG-090929-156"^^xsd:string ;
    <http://geneontology.org/lego/derived> "true"^^xsd:string
  ] .
 
@@ -172,7 +172,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/593423e000000023/593423e000000752
 <http://model.geneontology.org/593423e000000023/593423e000000752> rdf:type owl:NamedIndividual ,
-                                                                           <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+                                                                           <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1009-339X"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/date> "2017-06-04"^^xsd:string ;
                                                                   <http://purl.org/pav/providedBy> "http://geneontology.org"^^xsd:string .
@@ -232,7 +232,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/593423e000000023/593423e000000761
 <http://model.geneontology.org/593423e000000023/593423e000000761> rdf:type owl:NamedIndividual ,
-                                                                           <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+                                                                           <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1009-339X"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/date> "2017-06-04"^^xsd:string ;
                                                                   <http://purl.org/pav/providedBy> "http://geneontology.org"^^xsd:string .

models/5966411600000170.ttl

@@ -77,7 +77,7 @@
 
 <http://identifiers.org/zfin/ZDB-GENE-070912-124> a <http://www.w3.org/2002/07/owl#Class> .
 
-<http://identifiers.org/zfin/ZDB-GENE-090929-156> a <http://www.w3.org/2002/07/owl#Class> .
+<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> a <http://www.w3.org/2002/07/owl#Class> .
 
 <http://identifiers.org/zfin/ZDB-GENE-091027-1> a <http://www.w3.org/2002/07/owl#Class> .
 
@@ -167,7 +167,7 @@
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .
 
-<http://model.geneontology.org/5966411600000170/5966411600000198> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+<http://model.geneontology.org/5966411600000170/5966411600000198> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2017-07-12"^^<http://www.w3.org/2001/XMLSchema#string> .
 
@@ -259,7 +259,7 @@
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .
 
-<http://model.geneontology.org/5966411600000170/596a6e0600000057> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+<http://model.geneontology.org/5966411600000170/596a6e0600000057> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2017-07-17"^^<http://www.w3.org/2001/XMLSchema#string> .
 
@@ -274,7 +274,7 @@
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .
 
-<http://model.geneontology.org/5966411600000170/596a6e0600000060> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
+<http://model.geneontology.org/5966411600000170/596a6e0600000060> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
 	<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
 	<http://purl.org/dc/elements/1.1/date> "2017-07-17"^^<http://www.w3.org/2001/XMLSchema#string> .